Detailed information NTG0146916

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PDR5_RS24620
• Genome accession: NZ_CP011566
• Coordinates: 5476720..5478066 (+)
• Length: 448 a.a.
• NCBI ID: WP_064599509.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DR 5-09
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5471720..5483066

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PDR5_RS24595 (PDR5_49460)	pgeF	5471935..5472657 (-)	723	WP_064599505.1	peptidoglycan editing factor PgeF	-
PDR5_RS24600 (PDR5_49470)	rluD	5472654..5473616 (-)	963	WP_011335991.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PDR5_RS24605 (PDR5_49490)	-	5473769..5474785 (+)	1017	WP_007959566.1	outer membrane protein assembly factor BamD	-
PDR5_RS24610	-	5474911..5475144 (+)	234	WP_039771683.1	PP0621 family protein	-
PDR5_RS24615 (PDR5_49520)	pilS	5475134..5476723 (+)	1590	WP_064599507.1	ATP-binding protein	Regulator
PDR5_RS24620 (PDR5_49530)	pilR	5476720..5478066 (+)	1347	WP_064599509.1	sigma-54 dependent transcriptional regulator	Regulator
PDR5_RS24625 (PDR5_49540)	thiO	5478224..5479324 (-)	1101	WP_064599513.1	glycine oxidase ThiO	-
PDR5_RS24630 (PDR5_49550)	-	5479382..5479783 (-)	402	WP_064599515.1	type IV pilin protein	-
PDR5_RS24635 (PDR5_49560)	-	5479798..5482890 (-)	3093	WP_064599516.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50057.31 Da
• Isoelectric Point: 6.6657

>NTDB_id=146916 PDR5_RS24620 WP_064599509.1 5476720..5478066(+) (pilR) [Pseudomonas sp. DR 5-09]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHVLKRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNGTAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=146916 PDR5_RS24620 WP_064599509.1 5476720..5478066(+) (pilR) [Pseudomonas sp. DR 5-09]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGAAGCCCAAGCGCTGCTGCACCGCGAGACCTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACATTCAGCAACGTTATCCCCAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCGATCAACGCCCTCAAGGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTGGACCTGACGCGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGTATGCCGGCGCCGGGCAATGTCTGCACTTCGA
TCGACCGGCGGCTGCTCGGCGATTCACCGCCGATGCGCAACCTGCGCAAACAGATCGACAAACTGGCCCGCAGCCAGGCA
CCGGTCTACATCAGCGGCGAGTCTGGCAGTGGCAAGGAGCTGGTGGCCCGATTGATTCATGAACAAGGCCCCCGCGCCAA
TCAGCCGTTCGTGCCGGTGAACTGCGGGGCGATTCCTTCAGAGTTGATGGAGAGCGAGTTCTTCGGCCACCGCAAAGGCA
GTTTCAGCGGTGCAGTGGAGGATAAACCAGGACTGTTTCAGGCGGCCCATGGCGGCACACTGTTTCTCGATGAAGTGGCG
GATCTGCCGCTGCCGATGCAGGTCAAGCTGCTACGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGTCAACAGGA
AACCGTGGTTGATGTGCGCATCCTTTGCGCGACGCACAAGGATCTCGACGCGGAAGTGGCTGCCGAGCGCTTTCGTCAGG
ATCTGTATTACCGGTTGAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCGTTGGCC
GGCCATGTGCTCAAGCGCCTGGCCAATGGCACCGGGCAACCGGCGGCACGTCTTCACCCCCATGCACTCGAAGCGCTGAA
AAACTACCGTTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTCGAGCGGGCACACACCCTGTGTGAAAACCGCACGA
TCGAGGCCGAGGATTTACGCCTGAGTGAAGGTAATGGCACCGCTGAAGGCGGCATTGCCGATCTCACGCAGATCGACAAT
CTGGAAGACTATCTGGAAAGCGTCGAACGCAAACTGATTCTGCAGGCGCTGGAGGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGCCTGTCATTTCGGTCGATGCGCTACAGGCTGAAGAAACTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.91	98.884	0.79
pilR	Acinetobacter baumannii strain A118	48.366	100	0.496