Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABA10_RS15720 Genome accession   NZ_CP011534
Coordinates   3051778..3052422 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046778..3057422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS15685 (ABA10_15685) mrpB 3047970..3048401 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ABA10_RS15690 (ABA10_15690) mrpC 3048401..3048742 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ABA10_RS15695 (ABA10_15695) mrpD 3048735..3050216 (+) 1482 WP_047183107.1 Na+/H+ antiporter subunit D -
  ABA10_RS15700 (ABA10_15700) mrpE 3050222..3050698 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ABA10_RS15705 (ABA10_15705) mrpF 3050698..3050982 (+) 285 WP_047183108.1 Na(+)/H(+) antiporter subunit F1 -
  ABA10_RS15710 (ABA10_15710) mnhG 3050966..3051340 (+) 375 WP_047183109.1 monovalent cation/H(+) antiporter subunit G -
  ABA10_RS15715 (ABA10_15715) yuxO 3051379..3051759 (-) 381 WP_047183110.1 hotdog fold thioesterase -
  ABA10_RS15720 (ABA10_15720) comA 3051778..3052422 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ABA10_RS15725 (ABA10_15725) comP 3052503..3054815 (-) 2313 WP_047183111.1 histidine kinase Regulator
  ABA10_RS15730 (ABA10_15730) comX 3054831..3055052 (-) 222 WP_014114983.1 competence pheromone ComX -
  ABA10_RS15735 (ABA10_15735) - 3055049..3055918 (-) 870 WP_015714626.1 polyprenyl synthetase family protein -
  ABA10_RS15740 (ABA10_15740) degQ 3056102..3056242 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ABA10_RS22070 - 3056464..3056526 (+) 63 Protein_3039 hypothetical protein -
  ABA10_RS15745 (ABA10_15745) - 3056704..3057072 (+) 369 WP_047183112.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=146765 ABA10_RS15720 WP_003220716.1 3051778..3052422(-) (comA) [Bacillus subtilis strain UD1022]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=146765 ABA10_RS15720 WP_003220716.1 3051778..3052422(-) (comA) [Bacillus subtilis strain UD1022]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment