Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGB   Type   Machinery gene
Locus tag   ABA10_RS12340 Genome accession   NZ_CP011534
Coordinates   2407842..2408879 (-) Length   345 a.a.
NCBI ID   WP_047182873.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2402842..2413879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS12290 (ABA10_12290) tasA 2402941..2403726 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  ABA10_RS12295 (ABA10_12295) sipW 2403790..2404362 (-) 573 WP_080030740.1 signal peptidase I SipW -
  ABA10_RS12300 (ABA10_12300) tapA 2404346..2405107 (-) 762 WP_047182870.1 amyloid fiber anchoring/assembly protein TapA -
  ABA10_RS12305 (ABA10_12305) yqzG 2405377..2405703 (+) 327 WP_047183570.1 YqzG/YhdC family protein -
  ABA10_RS12310 (ABA10_12310) spoIITA 2405745..2405924 (-) 180 WP_003230176.1 YqzE family protein -
  ABA10_RS12315 (ABA10_12315) comGG 2405996..2406370 (-) 375 WP_047182871.1 ComG operon protein ComGG Machinery gene
  ABA10_RS12320 (ABA10_12320) comGF 2406371..2406754 (-) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  ABA10_RS12325 (ABA10_12325) comGE 2406780..2407127 (-) 348 WP_047182872.1 ComG operon protein 5 Machinery gene
  ABA10_RS12330 (ABA10_12330) comGD 2407111..2407542 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  ABA10_RS12335 (ABA10_12335) comGC 2407532..2407828 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  ABA10_RS12340 (ABA10_12340) comGB 2407842..2408879 (-) 1038 WP_047182873.1 comG operon protein ComGB Machinery gene
  ABA10_RS12345 (ABA10_12345) comGA 2408866..2409936 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  ABA10_RS12350 (ABA10_12350) corA 2410346..2411299 (-) 954 WP_015483432.1 magnesium transporter CorA -
  ABA10_RS12355 (ABA10_12355) yqhB 2411442..2412770 (+) 1329 WP_003230150.1 hemolysin family protein -
  ABA10_RS12360 (ABA10_12360) rsbRD 2412823..2413659 (-) 837 WP_015384093.1 RsbT co-antagonist protein RsbRD -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 39738.15 Da        Isoelectric Point: 9.6257

>NTDB_id=146750 ABA10_RS12340 WP_047182873.1 2407842..2408879(-) (comGB) [Bacillus subtilis strain UD1022]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDTVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQSDQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLALFTAGIGIYYWLVFKKKSPARQMLICVRIPLIGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIEAAICGSPFYEVDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=146750 ABA10_RS12340 WP_047182873.1 2407842..2408879(-) (comGB) [Bacillus subtilis strain UD1022]
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCCAGGTTATTAAAGCGGCTTGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCTGCTGACTTGACTGATACGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCCGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGTCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATTTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGTTGGCTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTGTCAGGATTCCTTTGATTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCGGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAAGCCGCTATTTG
TGGAAGCCCTTTTTATGAAGTTGATTTTTCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGAGAGCTTT
TCACATACAGTCAGTTCATATTGCAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

97.214

93.623

0.91


Multiple sequence alignment