Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABA10_RS12100 Genome accession   NZ_CP011534
Coordinates   2370417..2372147 (-) Length   576 a.a.
NCBI ID   WP_047182861.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2365417..2377147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS12065 (ABA10_12065) - 2365471..2365767 (-) 297 WP_047183569.1 hypothetical protein -
  ABA10_RS21705 (ABA10_12070) - 2366075..2366227 (+) 153 WP_015384065.1 hypothetical protein -
  ABA10_RS12075 (ABA10_12075) yqiG 2366300..2367418 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ABA10_RS12085 (ABA10_12085) spo0A 2367883..2368686 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ABA10_RS12095 (ABA10_12095) spoIVB 2368962..2370242 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ABA10_RS12100 (ABA10_12100) recN 2370417..2372147 (-) 1731 WP_047182861.1 DNA repair protein RecN Machinery gene
  ABA10_RS12105 (ABA10_12105) argR 2372184..2372633 (-) 450 WP_015384067.1 arginine repressor ArgR -
  ABA10_RS12110 (ABA10_12110) yqxC 2372731..2373576 (-) 846 WP_015384068.1 TlyA family RNA methyltransferase -
  ABA10_RS12115 (ABA10_12115) dxs 2373573..2375474 (-) 1902 WP_003245985.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABA10_RS12120 (ABA10_12120) ispA 2375649..2376539 (-) 891 WP_015483424.1 polyprenyl synthetase family protein -
  ABA10_RS12125 (ABA10_12125) xseB 2376529..2376783 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64570.44 Da        Isoelectric Point: 4.7697

>NTDB_id=146742 ABA10_RS12100 WP_047182861.1 2370417..2372147(-) (recN) [Bacillus subtilis strain UD1022]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGTEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKMSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=146742 ABA10_RS12100 WP_047182861.1 2370417..2372147(-) (recN) [Bacillus subtilis strain UD1022]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGTGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATTATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGTATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGACCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGCCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAGTCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCAGCGCAGCTAGAAGATATATCTGATATTAACGAACCGCTGAAAAAAAT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAATAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTGGT
GAAATTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCTCTTTCGAAAGTTGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGGAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGATCACAAGTGCTTTGTATTACACACCT
CCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.653

100

0.997

Multiple sequence alignment