Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABA10_RS12085 Genome accession   NZ_CP011534
Coordinates   2367883..2368686 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2362883..2373686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS12055 (ABA10_12055) glpQB 2364027..2364758 (-) 732 WP_047182859.1 glycerophosphodiester phosphodiesterase -
  ABA10_RS12060 (ABA10_12060) yqiI 2364831..2365451 (-) 621 WP_080344210.1 N-acetylmuramoyl-L-alanine amidase -
  ABA10_RS12065 (ABA10_12065) - 2365471..2365767 (-) 297 WP_047183569.1 hypothetical protein -
  ABA10_RS21705 (ABA10_12070) - 2366075..2366227 (+) 153 WP_015384065.1 hypothetical protein -
  ABA10_RS12075 (ABA10_12075) yqiG 2366300..2367418 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ABA10_RS12085 (ABA10_12085) spo0A 2367883..2368686 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ABA10_RS12095 (ABA10_12095) spoIVB 2368962..2370242 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ABA10_RS12100 (ABA10_12100) recN 2370417..2372147 (-) 1731 WP_047182861.1 DNA repair protein RecN Machinery gene
  ABA10_RS12105 (ABA10_12105) argR 2372184..2372633 (-) 450 WP_015384067.1 arginine repressor ArgR -
  ABA10_RS12110 (ABA10_12110) yqxC 2372731..2373576 (-) 846 WP_015384068.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=146741 ABA10_RS12085 WP_003226427.1 2367883..2368686(-) (spo0A) [Bacillus subtilis strain UD1022]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=146741 ABA10_RS12085 WP_003226427.1 2367883..2368686(-) (spo0A) [Bacillus subtilis strain UD1022]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATTGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACAGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment