Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AA961_RS10580 Genome accession   NZ_CP011528
Coordinates   2092611..2093006 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RKI4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2087611..2098006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA961_RS10550 (AA961_10550) thiE 2088074..2088715 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  AA961_RS10555 (AA961_10555) thiM 2088708..2089508 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  AA961_RS10560 (AA961_10560) thiD 2089492..2090322 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AA961_RS10565 (AA961_10565) tenA 2090315..2091004 (-) 690 WP_000396077.1 thiaminase II -
  AA961_RS10575 (AA961_10575) sceD 2091528..2092223 (-) 696 WP_047928572.1 lytic transglycosylase SceD -
  AA961_RS10580 (AA961_10580) ssb 2092611..2093006 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  AA961_RS10585 (AA961_10585) - 2093200..2093640 (+) 441 WP_000846746.1 YwpF-like family protein -
  AA961_RS10590 (AA961_10590) fabZ 2093699..2094139 (-) 441 WP_047928573.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AA961_RS10595 (AA961_10595) murA 2094173..2095438 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AA961_RS10600 (AA961_10600) - 2095549..2095782 (-) 234 WP_000384523.1 DUF1146 family protein -
  AA961_RS15160 (AA961_10605) - 2095914..2096006 (-) 93 WP_001790611.1 hypothetical protein -
  AA961_RS10610 (AA961_10610) - 2096344..2096748 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=146661 AA961_RS10580 WP_000932694.1 2092611..2093006(-) (ssb) [Staphylococcus aureus strain RKI4]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=146661 AA961_RS10580 WP_000932694.1 2092611..2093006(-) (ssb) [Staphylococcus aureus strain RKI4]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment