Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AA961_RS07760 Genome accession   NZ_CP011528
Coordinates   1575496..1576182 (-) Length   228 a.a.
NCBI ID   WP_078104170.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RKI4     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570496..1581182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA961_RS07740 (AA961_07740) rpsT 1571410..1571661 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  AA961_RS07745 (AA961_07745) holA 1571706..1572680 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  AA961_RS07750 (AA961_07750) comEC 1572737..1574938 (-) 2202 WP_025174327.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AA961_RS07755 (AA961_07755) - 1574943..1575404 (-) 462 WP_000439693.1 ComE operon protein 2 -
  AA961_RS07760 (AA961_07760) comEA 1575496..1576182 (-) 687 WP_078104170.1 ComEA family DNA-binding protein Machinery gene
  AA961_RS07765 (AA961_07765) - 1576222..1576938 (-) 717 WP_000084822.1 class I SAM-dependent DNA methyltransferase -
  AA961_RS07770 (AA961_07770) rsfS 1576941..1577294 (-) 354 WP_001088020.1 ribosome silencing factor -
  AA961_RS07775 (AA961_07775) yqeK 1577295..1577879 (-) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AA961_RS07780 (AA961_07780) nadD 1577869..1578438 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  AA961_RS07785 (AA961_07785) yhbY 1578441..1578731 (-) 291 WP_000627815.1 ribosome assembly RNA-binding protein YhbY -
  AA961_RS07790 (AA961_07790) aroE 1578735..1579541 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  AA961_RS07795 (AA961_07795) yqeH 1579555..1580655 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25875.55 Da        Isoelectric Point: 9.3305

>NTDB_id=146650 AA961_RS07760 WP_078104170.1 1575496..1576182(-) (comEA) [Staphylococcus aureus strain RKI4]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNINNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=146650 AA961_RS07760 WP_078104170.1 1575496..1576182(-) (comEA) [Staphylococcus aureus strain RKI4]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACATAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969

Multiple sequence alignment