Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AA098_RS08215 Genome accession   NZ_CP011525
Coordinates   1829757..1831973 (+) Length   738 a.a.
NCBI ID   WP_004575949.1    Uniprot ID   -
Organism   Pseudomonas sp. JY-Q     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1824757..1836973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA098_RS08195 (AA098_08180) - 1826633..1827256 (+) 624 WP_003247126.1 glutathione S-transferase -
  AA098_RS08200 (AA098_08185) - 1827390..1828322 (+) 933 WP_003247127.1 ABC transporter ATP-binding protein -
  AA098_RS08205 (AA098_08190) - 1828319..1829098 (+) 780 WP_003247128.1 ABC transporter permease -
  AA098_RS08210 (AA098_08195) - 1829108..1829614 (-) 507 Protein_1636 DUF2062 domain-containing protein -
  AA098_RS08215 (AA098_08200) comA 1829757..1831973 (+) 2217 WP_004575949.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AA098_RS08220 (AA098_08205) exbB 1832129..1832764 (+) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AA098_RS08225 (AA098_08210) - 1832761..1833195 (+) 435 WP_003247134.1 biopolymer transporter ExbD -
  AA098_RS08230 (AA098_08215) lpxK 1833195..1834196 (+) 1002 WP_003247136.1 tetraacyldisaccharide 4'-kinase -
  AA098_RS08235 (AA098_08220) - 1834241..1834426 (+) 186 WP_003247142.1 Trm112 family protein -
  AA098_RS08240 (AA098_08225) kdsB 1834423..1835187 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AA098_RS08245 (AA098_08230) - 1835187..1835651 (+) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  AA098_RS08250 (AA098_08235) murB 1835648..1836667 (+) 1020 WP_003247146.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79594.52 Da        Isoelectric Point: 10.4818

>NTDB_id=146571 AA098_RS08215 WP_004575949.1 1829757..1831973(+) (comA) [Pseudomonas sp. JY-Q]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSQFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGMAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPWWAWLLVCLGALLLLLPRGVPLRGLGGVMLLALW
VPREPVPFGQIEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAV
AIARGLPIKRIIGGEALVDVPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEVAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=146571 AA098_RS08215 WP_004575949.1 1829757..1831973(+) (comA) [Pseudomonas sp. JY-Q]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCAGTTTACCCGCGTATGGCCGTTGGGATGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGCACTGCACAAGGCGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGTTTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AACGCCCGGCCGGGCTGCTGAACCCGCACGGGCCTGACCGGGAAGCGCAGTTGCTGGCGCGACGGGTGGGGGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGGCAGGCAGCGCTGGTGGCACTGGTGCTTGGCGATGGTGCGGGCATGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATTGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCGGGTGGTGGGGTGCCAGTGCAGCGGGCCTGTCTGATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCTTTTTTTCCGTTGCTGCTTGCACTGGTCGCTGTGCTGGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGGGG
TTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCCGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCACCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
TTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAACAGCGCCCGGCATGGGTGCCGCCGGCCCTGCCGTGGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGCTTTTGCTGCCTCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTACCCAGGGAGCCGGTGCCGTTTGGCCAAATCGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTGCTCTTGCG
TACGCGGCATCACAGCCTGCTTTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATGCGGGCGGGGCCGTG
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCGTGTGCCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGTTTTTCGTTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTGCTGTTGGTCGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGTTGCTGCCGAACGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGTTTCGGGCACCCCCACGTGCAGGTGGTCG
AGCGGTATGGGCGGCATGGGGTGGTGATGCATGATACGGCGGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTGGGGGGTGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(11-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.252

97.696

0.569
  comA Ralstonia pseudosolanacearum GMI1000

34.371

100

0.374

Multiple sequence alignment