Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABE82_RS12520 Genome accession   NZ_CP011512
Coordinates   2904874..2906724 (+) Length   616 a.a.
NCBI ID   WP_053325446.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain HS311     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2899874..2911724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE82_RS12500 (ABE82_12515) - 2900612..2901835 (+) 1224 WP_028541284.1 Ger(x)C family spore germination protein -
  ABE82_RS12505 (ABE82_12520) - 2901844..2902071 (+) 228 WP_226887813.1 hypothetical protein -
  ABE82_RS12510 (ABE82_12525) - 2902634..2903044 (+) 411 WP_028541283.1 MarR family transcriptional regulator -
  ABE82_RS12515 (ABE82_12530) rcrP 2903118..2904881 (+) 1764 WP_023988614.1 ABC transporter ATP-binding protein Regulator
  ABE82_RS12520 (ABE82_12535) rcrQ 2904874..2906724 (+) 1851 WP_053325446.1 ABC transporter ATP-binding protein Regulator
  ABE82_RS12525 (ABE82_12540) - 2906844..2907152 (+) 309 WP_023988616.1 hypothetical protein -
  ABE82_RS28520 (ABE82_12545) - 2907494..2907850 (+) 357 WP_245240492.1 hypothetical protein -
  ABE82_RS12535 (ABE82_12550) - 2908096..2908515 (+) 420 WP_028541280.1 ester cyclase -
  ABE82_RS12540 (ABE82_12555) - 2908740..2910131 (-) 1392 WP_053325448.1 PLP-dependent aminotransferase family protein -
  ABE82_RS12545 (ABE82_12560) azlC 2910239..2910970 (+) 732 WP_053325449.1 azaleucine resistance protein AzlC -
  ABE82_RS12550 (ABE82_12565) - 2910951..2911283 (+) 333 WP_023988622.1 branched-chain amino acid transporter permease -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67816.34 Da        Isoelectric Point: 6.1585

>NTDB_id=146480 ABE82_RS12520 WP_053325446.1 2904874..2906724(+) (rcrQ) [Paenibacillus peoriae strain HS311]
MDKNEHTVDSQQMKMNQGGPMGKGPAGGKGAGEKANNFKKTISQLVSYSKAYVPMIVLAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVGALATFVGALIMMLYTNWIMTITGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKLDTAKGDVEFKHVRFGYNTDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAASRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGSFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=146480 ABE82_RS12520 WP_053325446.1 2904874..2906724(+) (rcrQ) [Paenibacillus peoriae strain HS311]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGGGAGGTCCCATGGGTAAAGGCCCTGCGGG
GGGCAAGGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTGTACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCGGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCGGTGCACTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTTTATACAAACTGGATCATGACCATTACCGGAATTGTAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCCTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTTTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGCGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGCTGGACACCGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATACAGATCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGTCCGACAGGTGCTGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATCAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCTAGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCCAATCTCTCCGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTTGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGATGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTGGCTAAAGGCAGCTTCTATGCTGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(58-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.326

93.669

0.528

Multiple sequence alignment