Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABE82_RS12515 Genome accession   NZ_CP011512
Coordinates   2903118..2904881 (+) Length   587 a.a.
NCBI ID   WP_023988614.1    Uniprot ID   A0AAJ3J4R6
Organism   Paenibacillus peoriae strain HS311     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2898118..2909881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE82_RS12495 (ABE82_12510) - 2899102..2900631 (+) 1530 WP_028541285.1 spore germination protein -
  ABE82_RS12500 (ABE82_12515) - 2900612..2901835 (+) 1224 WP_028541284.1 Ger(x)C family spore germination protein -
  ABE82_RS12505 (ABE82_12520) - 2901844..2902071 (+) 228 WP_226887813.1 hypothetical protein -
  ABE82_RS12510 (ABE82_12525) - 2902634..2903044 (+) 411 WP_028541283.1 MarR family transcriptional regulator -
  ABE82_RS12515 (ABE82_12530) rcrP 2903118..2904881 (+) 1764 WP_023988614.1 ABC transporter ATP-binding protein Regulator
  ABE82_RS12520 (ABE82_12535) rcrQ 2904874..2906724 (+) 1851 WP_053325446.1 ABC transporter ATP-binding protein Regulator
  ABE82_RS12525 (ABE82_12540) - 2906844..2907152 (+) 309 WP_023988616.1 hypothetical protein -
  ABE82_RS28520 (ABE82_12545) - 2907494..2907850 (+) 357 WP_245240492.1 hypothetical protein -
  ABE82_RS12535 (ABE82_12550) - 2908096..2908515 (+) 420 WP_028541280.1 ester cyclase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64866.14 Da        Isoelectric Point: 7.8021

>NTDB_id=146479 ABE82_RS12515 WP_023988614.1 2903118..2904881(+) (rcrP) [Paenibacillus peoriae strain HS311]
MLKIFKYLKKNEWMLVVCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYWIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=146479 ABE82_RS12515 WP_023988614.1 2903118..2904881(+) (rcrP) [Paenibacillus peoriae strain HS311]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTTGTGGTTTGCAGCCTAGCCTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCAGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCGATGGAAGAGATGAA
CAACTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCGATTCTGGCCGTGTGGGCCATTGTGAAGATTGCAGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGCTCTGATCCTGATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTCGAGTTGACGAATACAAACCTGTTTGCGAACCGTTTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGGATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGCTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATCCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAATGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAACATCAGCTTCACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGCAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAC
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTTCCTCAGAGAGCTGTACTGTTCAA
CGGTACGGTCGTATCCAACGTTTCGTACGGTGATAACGGAAGAGCAGGAGCTTCGGAGAAACTTGTCAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAATGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATTTTCGATGATTCCTT
CTCGGCACTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACGATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535

Multiple sequence alignment