Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AA956_RS04300 Genome accession   NZ_CP011501
Coordinates   972407..972922 (+) Length   171 a.a.
NCBI ID   WP_042114364.1    Uniprot ID   -
Organism   Pandoraea apista strain AU2161     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 967407..977922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA956_RS04290 (AA956_04290) uvrA 967866..970730 (-) 2865 WP_042114361.1 excinuclease ABC subunit UvrA -
  AA956_RS04295 (AA956_04295) - 971153..972376 (+) 1224 WP_042114362.1 MFS transporter -
  AA956_RS04300 (AA956_04300) ssb 972407..972922 (+) 516 WP_042114364.1 single-stranded DNA-binding protein Machinery gene
  AA956_RS04305 (AA956_04305) - 973057..973788 (+) 732 WP_082117761.1 HD domain-containing protein -
  AA956_RS04310 (AA956_04310) - 973892..975058 (+) 1167 WP_042114366.1 M20 aminoacylase family protein -
  AA956_RS04315 (AA956_04315) - 975080..975817 (-) 738 WP_042114367.1 GntR family transcriptional regulator -
  AA956_RS04320 (AA956_04320) - 976106..977560 (+) 1455 WP_042114368.1 2-hydroxymuconic semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17812.49 Da        Isoelectric Point: 5.3177

>NTDB_id=146374 AA956_RS04300 WP_042114364.1 972407..972922(+) (ssb) [Pandoraea apista strain AU2161]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTDRYSTEIVADQMQMLGGRGGEGGGGGGGGGGYSRGGGGDEGGGGGGYSRGGGGGGGRQQAPAKQSGG
GFDDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=146374 AA956_RS04300 WP_042114364.1 972407..972922(+) (ssb) [Pandoraea apista strain AU2161]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGTAACCTTGGCGCCGACCCCGAAGTCCGCTATTTGCCAAGCGGCGATGC
GGTCGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAATCCGGCGAGTTCAAGGAAATGACGGAATGGC
ACCGCGTGTCGTTCTTCGGCCGTCTCGCCGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGC
CGTATCCGCACGCGCAAGTATCAGGCGCAGGACGGCACGGACCGTTACAGCACGGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGTGGCCGTGGCGGTGAAGGTGGCGGTGGCGGCGGCGGTGGCGGTGGCTACTCGCGCGGCGGCGGTGGTGACGAAG
GCGGCGGTGGTGGCGGCTATTCGCGAGGCGGTGGCGGTGGCGGTGGCCGCCAGCAAGCGCCGGCCAAGCAGTCGGGCGGC
GGCTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.381

100

0.544
  ssb Glaesserella parasuis strain SC1401

47.222

100

0.497
  ssb Neisseria meningitidis MC58

42.938

100

0.444
  ssb Neisseria gonorrhoeae MS11

42.938

100

0.444
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.64

100

0.392

Multiple sequence alignment