Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AA956_RS04080 Genome accession   NZ_CP011501
Coordinates   922050..923537 (-) Length   495 a.a.
NCBI ID   WP_042114309.1    Uniprot ID   A0A0B5FF78
Organism   Pandoraea apista strain AU2161     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 917050..928537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA956_RS04050 (AA956_04050) mutY 917105..918277 (+) 1173 WP_042114301.1 A/G-specific adenine glycosylase -
  AA956_RS04055 (AA956_04055) rapZ 918279..919160 (-) 882 WP_042114302.1 RNase adapter RapZ -
  AA956_RS04060 (AA956_04060) - 919333..919659 (-) 327 WP_042114303.1 PsiF family protein -
  AA956_RS04065 (AA956_04065) hprK 919819..920784 (-) 966 WP_010804807.1 HPr(Ser) kinase/phosphatase -
  AA956_RS04070 (AA956_04070) ptsN 920862..921317 (-) 456 WP_042114306.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AA956_RS04075 (AA956_04075) hpf 921554..921907 (-) 354 WP_039373742.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AA956_RS04080 (AA956_04080) rpoN/rpoN1 922050..923537 (-) 1488 WP_042114309.1 RNA polymerase factor sigma-54 Machinery gene
  AA956_RS04085 (AA956_04085) lptB 923632..924402 (-) 771 WP_042117810.1 LPS export ABC transporter ATP-binding protein -
  AA956_RS04090 (AA956_04090) lptA 924428..925129 (-) 702 WP_082117758.1 lipopolysaccharide transport periplasmic protein LptA -
  AA956_RS04095 (AA956_04095) lptC 925126..925785 (-) 660 WP_042114310.1 LPS export ABC transporter periplasmic protein LptC -
  AA956_RS04100 (AA956_04100) - 925810..926382 (-) 573 WP_042114311.1 KdsC family phosphatase -
  AA956_RS04105 (AA956_04105) - 926394..927374 (-) 981 WP_042114313.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55108.95 Da        Isoelectric Point: 5.1872

>NTDB_id=146373 AA956_RS04080 WP_042114309.1 922050..923537(-) (rpoN/rpoN1) [Pandoraea apista strain AU2161]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERATSVSSTNDG
AESANGRDEARELDGETRFDDNSQDNGGDWSLNDFARSGSTSDDDDNARPQLHVDHPNLREHLLAQLRLTKAGPRDRALV
AFLIESLDEDGYLGTTLEEIEAEMPEELALETEEINAALALLQSFDPAGVGARSPAECLRLQLQRLPASSVRTLSLRIVS
DHLELLAARDYTRLRRVLGASEDGLRAAHQLIRSLDPFPGAAYGTPQADYVVPDVLVRRQGSGWTAELNPDVMPRLRINE
MYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHESTI
SRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAKY
REAMRIPAVNLRKSL

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=146373 AA956_RS04080 WP_042114309.1 922050..923537(-) (rpoN/rpoN1) [Pandoraea apista strain AU2161]
ATGAAACCGACTCTTCAACTCCGCACCTCGCAGCACCTGACCCTCACGCCGCAGTTGCAGCAATCGATCCGGTTGTTGCA
ACTGTCTACGCTCGAACTTCAGCAGGAAGTCGAGCACGCCCTCACCCAGAACCCGATGCTCGAACGCGAGGACGATTGGC
TCGCGGGCTCGGTACGTGTGGGCACGGACGGGTCGCTGCGCAACGAGCGGGCAACGTCGGTCAGCAGCACGAACGACGGC
GCCGAGTCCGCCAACGGCCGTGACGAAGCCCGCGAACTCGACGGCGAGACCCGGTTCGACGACAACTCGCAAGACAATGG
CGGCGACTGGAGCCTGAACGACTTCGCCCGCTCCGGCAGCACCTCGGACGACGACGACAACGCGCGTCCGCAGCTGCACG
TCGACCATCCCAACCTTCGCGAACACCTGCTGGCGCAGTTGCGCCTGACCAAGGCCGGTCCGCGCGACCGTGCGCTGGTG
GCGTTCCTGATCGAATCGCTCGACGAAGACGGCTATCTCGGCACCACGCTCGAAGAAATCGAGGCAGAAATGCCCGAAGA
ACTGGCGCTGGAGACCGAGGAAATCAACGCCGCGCTCGCGCTGCTGCAAAGCTTCGACCCGGCGGGTGTGGGCGCCCGCA
GCCCGGCCGAATGCCTTCGCCTGCAACTCCAGCGCCTGCCTGCGAGCAGCGTTCGCACGCTCTCGCTGCGCATCGTGAGC
GATCACCTGGAACTGCTCGCCGCACGCGATTACACCCGTCTGCGCCGCGTGCTGGGGGCGAGCGAAGACGGCTTGCGTGC
CGCCCATCAACTGATTCGTTCGCTCGATCCGTTCCCCGGTGCCGCGTATGGCACGCCGCAGGCCGATTACGTCGTGCCCG
ATGTGCTCGTGCGCAGACAGGGCAGCGGCTGGACCGCCGAGCTCAATCCCGACGTCATGCCGCGCCTGCGCATCAACGAG
ATGTACGCGCGCATTCTGCGCAATAACCGCAACGACCCGGGTACCGGCAACTTGCAACAACAACTTCAGGAAGCCCGCTG
GCTGATCAAAAACATCCAGCAGCGCTTCGATACGATCCTGCGCGTGGCGCAAGCGATCGTCGAGCGTCAAAAGAACTTCT
TCACGCATGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGTTTACACGAATCCACGATT
TCACGCGTGACCACCAGTAAGTACATGCTCACTCCATTTGGAACGTTTGAGCTGAAGTACTTCTTTGGTTCACATGTGGC
AACGGAAGCCGGGGGCGCAGCGTCATCGACCGCCATCCGCGCACTCATCAAGCAACTCATAGGAGCAGAAGACCCGCAGA
GCCCCCTTTCCGACAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGGTTCGTGGTGGCGCGGCGCACCGTCGCGAAATAC
CGCGAGGCCATGCGAATTCCGGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(133-322)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.864

100

0.687

Multiple sequence alignment