Detailed information NTG0146334

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABA45_RS03840
• Genome accession: NZ_CP011494
• Coordinates: 856115..857500 (-)
• Length: 461 a.a.
• NCBI ID: WP_048384393.1
• Uniprot ID: -
• Organism: Marinobacter psychrophilus strain 20041
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 851115..862500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABA45_RS19220 (ABA45_03830)	-	854980..855450 (+)	471	WP_053076118.1	type IV pilin protein	-
ABA45_RS18240	-	855479..856039 (-)	561	WP_053076119.1	GspH/FimT family pseudopilin	-
ABA45_RS03840 (ABA45_03840)	pilR	856115..857500 (-)	1386	WP_048384393.1	sigma-54 dependent transcriptional regulator	Regulator
ABA45_RS03845 (ABA45_03845)	-	857509..859179 (-)	1671	WP_048384394.1	PAS domain-containing sensor histidine kinase	-
ABA45_RS03850 (ABA45_03850)	-	859333..860997 (+)	1665	WP_048384395.1	NAD+ synthase	-
ABA45_RS03855 (ABA45_03855)	-	861053..861883 (-)	831	WP_048384396.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50500.76 Da
• Isoelectric Point: 5.6516

>NTDB_id=146334 ABA45_RS03840 WP_048384393.1 856115..857500(-) (pilR) [Marinobacter psychrophilus strain 20041]
MTKLTALIVDDEPDIRDLLEITLSRMGLNTVTAGTLAEGIAGMQKHTPNVCLTDMNLPDGKGIELVQWIQQHAPNTPVAV
ITAYGSMDTAIESLKAGAFDFVSKPVELPRLRELVNTALKLAQNPEPAQEDNSDHGLLLGNSAQIHTLRNQARKLARSQA
PVFIQGESGSGKELVARTIHQQGPRCDGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVDNKAGLFQSARGGTLFLDEIA
DLPLPMQVKLLRAIQEKAVRPVGDSHEVPVDIRVLSATHKDLPGLVQNGLFRQDLFYRINVIEIRVPPLRERSGDIALLA
RHILQRIAREYECTPIALSDAAIDYLKGYHFPGNVRELENILERAFTLCDSDVIDSSDLQLGSSSSHIDPSWLAPTGEVM
ATEDIKLSEQGLDLEGYLEGIERKAIEQALEATRWNKTAAAKKLGISFRALRYKLKKLGLD

Nucleotide

• Length: 1386 bp

>NTDB_id=146334 ABA45_RS03840 WP_048384393.1 856115..857500(-) (pilR) [Marinobacter psychrophilus strain 20041]
ATGACCAAACTTACCGCGCTGATCGTGGACGACGAACCCGACATCCGTGACCTGCTAGAGATCACTCTCAGTCGCATGGG
CCTGAACACAGTCACTGCGGGCACTCTAGCCGAGGGCATCGCGGGCATGCAAAAGCACACGCCAAATGTGTGCCTGACCG
ATATGAACCTGCCAGATGGCAAAGGCATAGAGCTGGTGCAATGGATTCAGCAGCATGCGCCCAACACGCCAGTCGCCGTT
ATAACCGCCTACGGCAGTATGGACACCGCTATTGAGTCCTTGAAAGCAGGTGCTTTTGATTTTGTGTCAAAGCCCGTTGA
ATTACCGCGGCTTCGAGAGCTAGTCAACACCGCCCTGAAACTGGCCCAAAACCCGGAGCCTGCTCAGGAAGACAATAGCG
ACCATGGCTTGCTGCTGGGCAATTCCGCCCAGATTCATACGTTACGCAATCAGGCCCGCAAACTTGCCCGCAGCCAGGCG
CCGGTCTTTATTCAAGGCGAATCCGGCAGCGGTAAAGAACTGGTCGCGCGCACCATTCACCAGCAGGGCCCCAGATGTGA
CGGGCCGTTCATAGCTGTGAACTGTGGTGCCATTCCTTCTGAGCTAATGGAAAGCGAATTTTTCGGCCACAAAAAAGGCA
GCTTTACCGGAGCCGTCGATAACAAAGCAGGCCTGTTTCAAAGCGCCAGGGGCGGCACTCTGTTTCTGGATGAAATCGCT
GACCTGCCATTGCCCATGCAGGTAAAACTTCTGCGGGCCATTCAGGAAAAAGCCGTACGCCCTGTGGGCGACAGCCACGA
AGTGCCGGTGGATATTCGCGTGCTTAGCGCCACCCATAAAGACCTTCCGGGGCTGGTGCAGAATGGCCTGTTCCGACAGG
ACCTGTTCTATCGCATTAACGTGATTGAAATTCGCGTGCCGCCCCTGCGTGAACGCAGCGGCGACATAGCGCTGCTGGCC
CGGCACATCCTGCAGCGCATTGCTCGCGAATACGAGTGCACTCCTATCGCTCTTTCCGACGCCGCCATCGACTATTTAAA
GGGCTACCATTTTCCCGGTAATGTGCGCGAACTTGAAAACATACTAGAGCGGGCGTTTACCCTTTGCGACAGTGACGTTA
TTGATAGCAGCGACCTTCAGCTGGGCAGCTCTAGCAGCCATATTGATCCGTCTTGGCTAGCACCTACGGGCGAGGTAATG
GCAACGGAGGATATCAAACTATCGGAGCAGGGCCTGGACCTTGAGGGATATCTGGAAGGCATAGAGCGCAAAGCTATTGA
GCAGGCGCTTGAGGCAACGCGCTGGAATAAGACGGCGGCGGCGAAAAAGCTGGGGATTAGTTTTCGGGCGTTGCGGTATA
AGTTGAAGAAGTTGGGACTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (418-458)

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.338	100	0.625
pilR	Acinetobacter baumannii strain A118	52.826	99.783	0.527