Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | AA974_RS07110 | Genome accession | NZ_CP011487 |
| Coordinates | 1464951..1465526 (+) | Length | 191 a.a. |
| NCBI ID | WP_064433972.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PNG84A | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1459951..1470526
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA974_RS07085 (AA974_07125) | uvrD | 1460642..1462687 (+) | 2046 | WP_064433967.1 | DNA helicase UvrD | - |
| AA974_RS07090 (AA974_07130) | flgA | 1462684..1463340 (+) | 657 | WP_064433968.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| AA974_RS07095 (AA974_07135) | - | 1463350..1463913 (+) | 564 | WP_064433969.1 | UbiX family flavin prenyltransferase | - |
| AA974_RS07100 (AA974_07140) | coaD | 1463913..1464386 (+) | 474 | WP_064433970.1 | pantetheine-phosphate adenylyltransferase | - |
| AA974_RS07105 (AA974_07145) | tmk | 1464388..1464963 (+) | 576 | WP_064433971.1 | dTMP kinase | - |
| AA974_RS07110 (AA974_07150) | comFC | 1464951..1465526 (+) | 576 | WP_064433972.1 | ComF family protein | Machinery gene |
| AA974_RS07115 (AA974_07155) | - | 1465558..1467597 (+) | 2040 | WP_064433973.1 | class I SAM-dependent DNA methyltransferase | - |
| AA974_RS07970 (AA974_07160) | - | 1467594..1468235 (+) | 642 | WP_064433974.1 | restriction endonuclease subunit S | - |
| AA974_RS07975 (AA974_07165) | - | 1468262..1468819 (+) | 558 | WP_064433975.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21265.85 Da Isoelectric Point: 9.2796
>NTDB_id=146309 AA974_RS07110 WP_064433972.1 1464951..1465526(+) (comFC) [Helicobacter pylori strain PNG84A]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFTIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFTIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=146309 AA974_RS07110 WP_064433972.1 1464951..1465526(+) (comFC) [Helicobacter pylori strain PNG84A]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAGGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCTTTGCTTTCTCAAAAAGCCGGGGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCAATTGATGATAAAGTCAAATCCTTTTATTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTGAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCCGGAAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAGGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATCAAAGCGCATTTTACGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAGGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCTTTGCTTTCTCAAAAAGCCGGGGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCAATTGATGATAAAGTCAAATCCTTTTATTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTGAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCCGGAAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAGGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATCAAAGCGCATTTTACGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |