Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   AA974_RS06160 Genome accession   NZ_CP011487
Coordinates   1259804..1261117 (-) Length   437 a.a.
NCBI ID   WP_064433835.1    Uniprot ID   -
Organism   Helicobacter pylori strain PNG84A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1254804..1266117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA974_RS06130 (AA974_06155) nadC 1255267..1256088 (-) 822 WP_064433830.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AA974_RS06135 (AA974_06160) nadA 1256088..1257098 (-) 1011 WP_064433831.1 quinolinate synthase NadA -
  AA974_RS06140 (AA974_06165) - 1257088..1257891 (-) 804 WP_064433832.1 phosphatidylserine decarboxylase -
  AA974_RS06145 (AA974_06170) - 1257885..1258391 (-) 507 WP_000953084.1 DUF6115 domain-containing protein -
  AA974_RS06150 (AA974_06175) - 1258404..1258898 (-) 495 WP_064433833.1 hypothetical protein -
  AA974_RS06155 (AA974_06180) mqnP 1258891..1259733 (-) 843 WP_230380966.1 menaquinone biosynthesis prenyltransferase MqnP -
  AA974_RS06160 (AA974_06185) comEC/comE3 1259804..1261117 (-) 1314 WP_064433835.1 ComEC/Rec2 family competence protein Machinery gene
  AA974_RS06165 (AA974_06190) - 1261114..1262580 (-) 1467 WP_064433836.1 replicative DNA helicase -
  AA974_RS06170 (AA974_06195) - 1262592..1263986 (-) 1395 WP_064433837.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  AA974_RS06175 (AA974_06200) crdS 1263989..1265203 (-) 1215 WP_080471055.1 copper-sensing histidine kinase CrdS -
  AA974_RS06180 (AA974_06205) crdR 1265169..1265810 (-) 642 WP_064433838.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50402.47 Da        Isoelectric Point: 9.9662

>NTDB_id=146303 AA974_RS06160 WP_064433835.1 1259804..1261117(-) (comEC/comE3) [Helicobacter pylori strain PNG84A]
MKDKTFKGAFELLTTPKEYLWCGVILSLLLSLNLYLEYLNYQKLDFSKPTSLNAQILLQYSKTKDQKTYFVLKLQSKGMF
FYTTIREPLKNLQYRHAQFFGRIKPCPFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALAGNLYRALFIGDSL
NKDLRDRANALGVNHLLAISGFHLGILSMSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQAISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLMFIVFFPLSLFLHAVGLGSLLDRILNMPLAIPTIFVSSSLWLLGVHLFLT
ILSARFFKVYLSMNVLSMGFFLYCCYQYIIMPGLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=146303 AA974_RS06160 WP_064433835.1 1259804..1261117(-) (comEC/comE3) [Helicobacter pylori strain PNG84A]
TTGAAAGACAAAACTTTTAAAGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTGGTGTGGGGTTATTTTAAG
CCTTTTGTTATCACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACTCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGTTC
TTTTACACCACCATTAGAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAGGATCAAACCCTGCCC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTTAAATCGCATT
TACGCCATTTTATTGATAGCGCTCATTCAAACGCTTTAGCGGGCAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGTTAGGGGTCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCATGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTGTTAGATTTTTTACCCTCTTTTTTCAGAGCG
TTTCTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCGTTTCAAGCCATAAGCTTAAGT
GCGCTAGTGTTTTTGAACATGCTCATTATTGTGCATGCCTTTTTCCCTATGTTTTCACCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATGTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTTTGTTTCTTCGTCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATCTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTGGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.364

100

0.934

Multiple sequence alignment