Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   AA977_RS06690 Genome accession   NZ_CP011486
Coordinates   1392552..1393994 (-) Length   480 a.a.
NCBI ID   WP_064435046.1    Uniprot ID   A0A1A9HEL8
Organism   Helicobacter pylori strain K26A1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387552..1398994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA977_RS06665 (AA977_06755) recG 1388692..1390557 (-) 1866 WP_064435043.1 ATP-dependent DNA helicase RecG -
  AA977_RS06670 (AA977_06760) - 1390639..1390986 (+) 348 WP_020973070.1 hypothetical protein -
  AA977_RS06675 (AA977_06765) - 1390990..1391625 (+) 636 WP_064435044.1 outer membrane protein -
  AA977_RS06680 (AA977_06770) - 1391622..1392374 (-) 753 WP_064435045.1 exodeoxyribonuclease III -
  AA977_RS06690 (AA977_06780) comH 1392552..1393994 (-) 1443 WP_064435046.1 hypothetical protein Machinery gene
  AA977_RS06695 (AA977_06785) dnaA 1394170..1395537 (-) 1368 WP_064435047.1 chromosomal replication initiator protein DnaA -
  AA977_RS06700 (AA977_06790) - 1395691..1396233 (+) 543 WP_064435048.1 purine-nucleoside phosphorylase -
  AA977_RS06705 (AA977_06795) - 1396268..1396507 (+) 240 WP_000461849.1 DUF2443 family protein -
  AA977_RS06710 (AA977_06800) glmS 1396508..1398301 (+) 1794 WP_064435049.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  AA977_RS06715 (AA977_06805) thyX 1398327..1398953 (+) 627 WP_064435050.1 FAD-dependent thymidylate synthase -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54843.73 Da        Isoelectric Point: 6.5953

>NTDB_id=146287 AA977_RS06690 WP_064435046.1 1392552..1393994(-) (comH) [Helicobacter pylori strain K26A1]
MKKSLCLSFFLAFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPDRSIIPRNTQIIFSSELKEPRPNQIPSLNAPMQKPQNKPSSSQQLPQNFSYPESKLGPKNSKNSLLQPLT
TPSKISSANETKTPTNDTKPPLKHSSEDQENNLFITPPTEKTPPNNNASHADTHENNESNEDSKDNAEKQAVRDPNVKEF
ACGKWVYDDENLQAYRPSILKRVDENKQTTTDITPCDYSMAENKSGKIITPYTKISVQKTEPLEEPQTFEAKNNFAILQA
RSTTEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNE
LNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCVALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=146287 AA977_RS06690 WP_064435046.1 1392552..1393994(-) (comH) [Helicobacter pylori strain K26A1]
ATGAAAAAATCCCTATGTTTGTCTTTTTTCCTCGCTTTTTCTAACCCCCTTCAAGCTCTTGTCATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACATTTAAAGCTAAAGTCCTTGATTCTAAAGAGCCAAGACAGGTTTTAGGAGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACTCATATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCCTTAGAAACGACCTTAAACCCTGATCGCTCTATCATTCCTAGAAACACGCAAATTATCTTTTCTTCAGAATT
GAAAGAACCACGCCCCAACCAAATACCCTCTTTAAACGCGCCCATGCAAAAACCGCAAAATAAACCCAGTTCATCGCAAC
AACTTCCTCAAAACTTTTCTTATCCAGAATCCAAACTAGGCCCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTAACA
ACCCCTAGCAAAATAAGCTCTGCTAATGAAACTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAACATTCTTCAGA
AGATCAAGAAAACAACCTTTTTATAACGCCGCCCACTGAAAAAACGCCCCCCAATAACAACGCTTCTCATGCTGATACTC
ATGAAAACAATGAAAGCAACGAAGATAGTAAGGATAATGCGGAAAAACAAGCCGTTAGAGATCCTAATGTCAAGGAATTT
GCGTGCGGGAAGTGGGTTTATGATGATGAAAATTTGCAAGCCTATCGCCCAAGCATTTTAAAGCGCGTTGATGAAAACAA
ACAGACCACCACAGACATTACCCCTTGCGATTACAGCATGGCTGAAAATAAAAGCGGTAAAATCATTACCCCTTACACTA
AAATCTCCGTTCAAAAAACAGAGCCTTTAGAAGAGCCTCAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCC
AGAAGCACCACAGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACCATTAGGCAATGCTATTTGATAGAAGAGCC
TTTAAAACAAGCGTGGGAAAGTGAGTATGAAATCACCACGCAATTAGTCAAAGCCATTTATGAGCGCCCCAAACAAGACG
ACCAAGTAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACGCGAAAAAGCGAAATAACGCACAATGAG
TTGAATTTGAATGAAAAGTTTATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAG
TGAATACAAAGAATGGGTTAAAAACCATGTGCGGTTTAAAGAGGGGGTGTGTGTTGCTTTAGAAATAGAAGAGCAACCAC
GAGCCAAAAGCACGCCTTTAAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAAGGGAATTATTTATTCAATGAAGTT
TGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9HEL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.476

100

0.917

Multiple sequence alignment