Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | AA977_RS06420 | Genome accession | NZ_CP011486 |
| Coordinates | 1332840..1333415 (-) | Length | 191 a.a. |
| NCBI ID | WP_064435002.1 | Uniprot ID | A0A1A9HEG6 |
| Organism | Helicobacter pylori strain K26A1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1327840..1338415
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA977_RS06405 (AA977_06495) | - | 1329517..1330095 (-) | 579 | WP_064434999.1 | restriction endonuclease subunit S | - |
| AA977_RS06410 (AA977_06500) | - | 1330122..1330766 (-) | 645 | WP_064435000.1 | restriction endonuclease subunit S | - |
| AA977_RS06415 (AA977_06505) | - | 1330763..1332805 (-) | 2043 | WP_064435001.1 | N-6 DNA methylase | - |
| AA977_RS06420 (AA977_06510) | comFC | 1332840..1333415 (-) | 576 | WP_064435002.1 | ComF family protein | Machinery gene |
| AA977_RS06425 (AA977_06515) | tmk | 1333403..1333978 (-) | 576 | WP_064435003.1 | dTMP kinase | - |
| AA977_RS06430 (AA977_06520) | coaD | 1333980..1334453 (-) | 474 | WP_064435004.1 | pantetheine-phosphate adenylyltransferase | - |
| AA977_RS06435 (AA977_06525) | - | 1334453..1335016 (-) | 564 | WP_033618345.1 | UbiX family flavin prenyltransferase | - |
| AA977_RS06440 (AA977_06530) | flgA | 1335026..1335682 (-) | 657 | WP_064435005.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| AA977_RS06445 (AA977_06535) | - | 1335679..1337724 (-) | 2046 | WP_064435006.1 | ATP-dependent helicase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21441.05 Da Isoelectric Point: 9.0983
>NTDB_id=146286 AA977_RS06420 WP_064435002.1 1332840..1333415(-) (comFC) [Helicobacter pylori strain K26A1]
MRCLTCLRLSFKPLCQRCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGHLKPTYGNLRATNAVSYAGKSLDFRINNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKSLNIKAHFAIALCDADE
MRCLTCLRLSFKPLCQRCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGHLKPTYGNLRATNAVSYAGKSLDFRINNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKSLNIKAHFAIALCDADE
Nucleotide
Download Length: 576 bp
>NTDB_id=146286 AA977_RS06420 WP_064435002.1 1332840..1333415(-) (comFC) [Helicobacter pylori strain K26A1]
ATGCGTTGTTTAACTTGTTTAAGGCTTTCTTTCAAGCCTCTTTGTCAGCGCTGTTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CATTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCGGGTGCAGAGTTTGTGAAAATCTTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCCATTTAAAGCCCACTTATGGGAATTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGTTTGG
ATTTTCGCATCAATAACCCACGAAATTTCACTTTCAAGGGCGATAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCTTAAAATATCTTAAATCCTTAAACATTAAAGCGCATTTTGCGATCGCGCTTTG
TGATGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTAAGGCTTTCTTTCAAGCCTCTTTGTCAGCGCTGTTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CATTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCGGGTGCAGAGTTTGTGAAAATCTTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCCATTTAAAGCCCACTTATGGGAATTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGTTTGG
ATTTTCGCATCAATAACCCACGAAATTTCACTTTCAAGGGCGATAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCTTAAAATATCTTAAATCCTTAAACATTAAAGCGCATTTTGCGATCGCGCTTTG
TGATGCGGATGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.194 |
100 |
0.932 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |