Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AA977_RS01640 Genome accession   NZ_CP011486
Coordinates   343463..344263 (+) Length   266 a.a.
NCBI ID   WP_064434329.1    Uniprot ID   A0A1A9HBT5
Organism   Helicobacter pylori strain K26A1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 338463..349263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA977_RS01605 (AA977_01630) pseH 338956..339498 (+) 543 WP_064434324.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  AA977_RS01610 (AA977_01635) - 339431..340369 (-) 939 WP_064434325.1 tetraacyldisaccharide 4'-kinase -
  AA977_RS01615 (AA977_01640) - 340366..341148 (-) 783 WP_064434326.1 NAD+ synthase -
  AA977_RS01625 (AA977_01650) ilvC 341405..342397 (+) 993 WP_064434327.1 ketol-acid reductoisomerase -
  AA977_RS01630 (AA977_01655) minD 342420..343226 (+) 807 WP_064434328.1 septum site-determining protein MinD -
  AA977_RS01635 (AA977_01660) minE 343223..343456 (+) 234 WP_000051430.1 cell division topological specificity factor MinE -
  AA977_RS01640 (AA977_01665) dprA 343463..344263 (+) 801 WP_064434329.1 DNA-processing protein DprA Machinery gene
  AA977_RS01645 (AA977_01670) dprB 344260..344664 (+) 405 WP_064434330.1 Holliday junction resolvase RuvX Machinery gene
  AA977_RS01650 (AA977_01675) - 344930..345898 (+) 969 WP_172796011.1 tetratricopeptide repeat protein -
  AA977_RS01655 (AA977_01680) - 346018..346356 (+) 339 WP_011577865.1 hypothetical protein -
  AA977_RS01660 (AA977_01685) - 346340..346900 (+) 561 WP_064434331.1 hypothetical protein -
  AA977_RS01665 (AA977_01690) - 346977..347858 (-) 882 WP_064434332.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29925.74 Da        Isoelectric Point: 8.2274

>NTDB_id=146279 AA977_RS01640 WP_064434329.1 343463..344263(+) (dprA) [Helicobacter pylori strain K26A1]
MKSHFQYSALENIPKVFDILKDPPKKLYCVGDTKLLDAPLKVAIIGTRRPTPYSKQHTITLAKELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFVYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDVVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIYHFINTLLKDYHLQEINENKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRVNHFVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=146279 AA977_RS01640 WP_064434329.1 343463..344263(+) (dprA) [Helicobacter pylori strain K26A1]
ATGAAAAGCCATTTCCAATACAGTGCGCTAGAAAATATCCCTAAAGTTTTTGACATCCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACCAAGCTTTTAGATGCACCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACCATCACGCTAGCTAAAGAGCTTGCCAAAAATGGCGCGGTTATTGTGAGTGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACAATCATGCTTTCGCCTTGCAGTTTGGATTTTGTCTATCCTACCAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCTTAGTGATCGCTTTAAGCGATGTGGTGATTATCCCCCAAGCGGATTTGAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCCTATTTGTTTTGCCCCAACGCTTGAATGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAACATTTATCATTTTATAAACACCCTTTTAAAAGACT
ATCATTTACAAGAAATAAATGAAAATAAAGATGAATTTTTAGAATATTGCGCGAAAAACCCTAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAACTTTTAGAATACGAGTTATTAGGCAAGATCAAGCGCGTCAATCATTTCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9HBT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

94.737

100

0.947
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.899

85.338

0.417

Multiple sequence alignment