Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | AA973_RS06915 | Genome accession | NZ_CP011485 |
| Coordinates | 1433643..1434218 (+) | Length | 191 a.a. |
| NCBI ID | WP_064438140.1 | Uniprot ID | A0A1A9HA94 |
| Organism | Helicobacter pylori strain ausabrJ05 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1428643..1439218
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA973_RS06890 (AA973_06935) | - | 1429334..1431379 (+) | 2046 | WP_064438137.1 | ATP-dependent helicase | - |
| AA973_RS06895 (AA973_06940) | flgA | 1431376..1432032 (+) | 657 | WP_064438138.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| AA973_RS06900 (AA973_06945) | - | 1432042..1432605 (+) | 564 | WP_000780104.1 | UbiX family flavin prenyltransferase | - |
| AA973_RS06905 (AA973_06950) | coaD | 1432605..1433078 (+) | 474 | WP_064438257.1 | pantetheine-phosphate adenylyltransferase | - |
| AA973_RS06910 (AA973_06955) | tmk | 1433080..1433655 (+) | 576 | WP_064438139.1 | dTMP kinase | - |
| AA973_RS06915 (AA973_06960) | comFC | 1433643..1434218 (+) | 576 | WP_064438140.1 | ComF family protein | Machinery gene |
| AA973_RS06920 (AA973_06965) | - | 1434257..1435699 (-) | 1443 | WP_064438141.1 | hypothetical protein | - |
| AA973_RS06925 (AA973_06970) | - | 1435762..1436901 (-) | 1140 | WP_080471682.1 | DNA methyltransferase | - |
| AA973_RS06930 (AA973_06975) | - | 1436905..1437912 (-) | 1008 | WP_064438142.1 | DNA adenine methylase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21296.87 Da Isoelectric Point: 9.2796
>NTDB_id=146266 AA973_RS06915 WP_064438140.1 1433643..1434218(+) (comFC) [Helicobacter pylori strain ausabrJ05]
MRCLTCLKLSFKPLCQNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKATYGRLRAANTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNVKAHFAIALCSADE
MRCLTCLKLSFKPLCQNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKATYGRLRAANTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNVKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=146266 AA973_RS06915 WP_064438140.1 1433643..1434218(+) (comFC) [Helicobacter pylori strain ausabrJ05]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCACTTTGTCAGAATTGCTTAAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAATTTGTGAAAATCTTACAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATTGCCATTGATGATAAAGTCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGTAATTTGAAAGCCACTTACGGGCGTTTAAGGGCTGCCAATACGATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAATGTCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCACTTTGTCAGAATTGCTTAAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAATTTGTGAAAATCTTACAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATTGCCATTGATGATAAAGTCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGTAATTTGAAAGCCACTTACGGGCGTTTAAGGGCTGCCAATACGATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAATGTCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.194 |
100 |
0.932 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |