Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   AA973_RS00090 Genome accession   NZ_CP011485
Coordinates   11741..12004 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain ausabrJ05     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6741..17004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA973_RS00065 (AA973_00065) groES 7036..7392 (-) 357 WP_064437107.1 co-chaperone GroES -
  AA973_RS00070 (AA973_00070) dnaG 7668..9347 (+) 1680 WP_064437108.1 DNA primase -
  AA973_RS00075 (AA973_00075) - 9344..10396 (+) 1053 WP_064437109.1 MnmA/TRMU family protein -
  AA973_RS00080 (AA973_00080) - 10487..11314 (+) 828 WP_064437110.1 DUF5718 family protein -
  AA973_RS00085 (AA973_00085) comB2 11460..11741 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  AA973_RS00090 (AA973_00090) comB3 11741..12004 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  AA973_RS00095 (AA973_00095) comB4 12006..14369 (+) 2364 WP_064437111.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  AA973_RS00105 (AA973_00100) - 14696..16036 (+) 1341 WP_064437112.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=146249 AA973_RS00090 WP_000584956.1 11741..12004(+) (comB3) [Helicobacter pylori strain ausabrJ05]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=146249 AA973_RS00090 WP_000584956.1 11741..12004(+) (comB3) [Helicobacter pylori strain ausabrJ05]
ATGATTATCCTATCAGCGAGCGTGAAAAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGTTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment