Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | AA976_RS07300 | Genome accession | NZ_CP011484 |
| Coordinates | 1518652..1519227 (+) | Length | 191 a.a. |
| NCBI ID | WP_033746068.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain CC33C | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1513652..1524227
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA976_RS07275 (AA976_07310) | uvrD | 1514343..1516388 (+) | 2046 | WP_064436973.1 | DNA helicase UvrD | - |
| AA976_RS07280 (AA976_07315) | flgA | 1516385..1517041 (+) | 657 | WP_064436974.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| AA976_RS07285 (AA976_07320) | - | 1517051..1517614 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| AA976_RS07290 (AA976_07325) | coaD | 1517614..1518087 (+) | 474 | WP_060473830.1 | pantetheine-phosphate adenylyltransferase | - |
| AA976_RS07295 (AA976_07330) | tmk | 1518089..1518664 (+) | 576 | WP_064436975.1 | dTMP kinase | - |
| AA976_RS07300 (AA976_07335) | comFC | 1518652..1519227 (+) | 576 | WP_033746068.1 | ComF family protein | Machinery gene |
| AA976_RS07305 (AA976_07340) | - | 1519261..1521300 (+) | 2040 | WP_064436976.1 | class I SAM-dependent DNA methyltransferase | - |
| AA976_RS08835 (AA976_07345) | - | 1521297..1521959 (+) | 663 | WP_064436977.1 | restriction endonuclease subunit S | - |
| AA976_RS08840 (AA976_07350) | - | 1521986..1522528 (+) | 543 | WP_064436978.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21294.85 Da Isoelectric Point: 9.1173
>NTDB_id=146246 AA976_RS07300 WP_033746068.1 1518652..1519227(+) (comFC) [Helicobacter pylori strain CC33C]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=146246 AA976_RS07300 WP_033746068.1 1518652..1519227(+) (comFC) [Helicobacter pylori strain CC33C]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
GGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTAAACACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAATATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
GGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAGGCCGGCGCGGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTAAACACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAATATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
92.67 |
100 |
0.927 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |