Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | AA976_RS01990 | Genome accession | NZ_CP011484 |
| Coordinates | 401332..401754 (+) | Length | 140 a.a. |
| NCBI ID | WP_064436355.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain CC33C | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 396332..406754
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA976_RS01955 (AA976_01980) | - | 396513..397451 (-) | 939 | WP_033746643.1 | tetraacyldisaccharide 4'-kinase | - |
| AA976_RS01960 (AA976_01985) | - | 397448..398230 (-) | 783 | WP_064436351.1 | NAD+ synthase | - |
| AA976_RS01970 (AA976_01995) | ilvC | 398479..399471 (+) | 993 | WP_064436352.1 | ketol-acid reductoisomerase | - |
| AA976_RS01975 (AA976_02000) | minD | 399492..400298 (+) | 807 | WP_064436353.1 | septum site-determining protein MinD | - |
| AA976_RS01980 (AA976_02005) | minE | 400295..400528 (+) | 234 | WP_000051414.1 | cell division topological specificity factor MinE | - |
| AA976_RS01985 (AA976_02010) | dprA | 400535..401335 (+) | 801 | WP_064436354.1 | DNA-processing protein DprA | Machinery gene |
| AA976_RS01990 (AA976_02015) | dprB | 401332..401754 (+) | 423 | WP_064436355.1 | Holliday junction resolvase RuvX | Machinery gene |
| AA976_RS01995 (AA976_02020) | - | 402019..402192 (+) | 174 | WP_412767741.1 | sel1 repeat family protein | - |
| AA976_RS02000 (AA976_02025) | - | 402455..402787 (+) | 333 | Protein_387 | hypothetical protein | - |
| AA976_RS02005 (AA976_02030) | - | 402849..403409 (+) | 561 | WP_064436356.1 | hypothetical protein | - |
| AA976_RS02010 (AA976_02035) | - | 403553..404434 (-) | 882 | WP_064436357.1 | RluA family pseudouridine synthase | - |
| AA976_RS02015 (AA976_02040) | recJ | 404434..405984 (-) | 1551 | WP_064436358.1 | single-stranded-DNA-specific exonuclease RecJ | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15850.46 Da Isoelectric Point: 9.1625
>NTDB_id=146239 AA976_RS01990 WP_064436355.1 401332..401754(+) (dprB) [Helicobacter pylori strain CC33C]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQKVLKSARDKILV
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQKVLKSARDKILV
Nucleotide
Download Length: 423 bp
>NTDB_id=146239 AA976_RS01990 WP_064436355.1 401332..401754(+) (dprB) [Helicobacter pylori strain CC33C]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCATAATAGGAATCAAGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAGAAGGTTTTAAAAAGCG
CTAGGGATAAAATTCTAGTATAA
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCATAATAGGAATCAAGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAGAAGGTTTTAAAAAGCG
CTAGGGATAAAATTCTAGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
96.992 |
95 |
0.921 |