Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EE66_RS04640 Genome accession   NZ_CP011483
Coordinates   945569..945973 (-) Length   134 a.a.
NCBI ID   WP_064431157.1    Uniprot ID   -
Organism   Helicobacter pylori strain DU15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 940569..950973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE66_RS04600 (EE66_04595) - 940596..941720 (-) 1125 WP_064431153.1 hypothetical protein -
  EE66_RS04605 (EE66_04600) - 941710..942495 (-) 786 WP_064431154.1 hypothetical protein -
  EE66_RS08080 - 942495..942876 (-) 382 Protein_885 DUF1294 domain-containing protein -
  EE66_RS08630 (EE66_04610) - 943211..943798 (-) 588 WP_253781931.1 lysozyme -
  EE66_RS04625 (EE66_04615) - 943895..944455 (-) 561 WP_064431156.1 hypothetical protein -
  EE66_RS04630 (EE66_04620) - 944439..944777 (-) 339 WP_017280149.1 hypothetical protein -
  EE66_RS08635 (EE66_04625) - 944964..945167 (-) 204 WP_253782011.1 sel1 repeat family protein -
  EE66_RS08640 - 945302..945433 (-) 132 WP_253781933.1 tetratricopeptide repeat protein -
  EE66_RS04640 (EE66_04635) dprB 945569..945973 (-) 405 WP_064431157.1 Holliday junction resolvase RuvX Machinery gene
  EE66_RS04645 (EE66_04640) dprA 945970..946770 (-) 801 WP_064431158.1 DNA-processing protein DprA Machinery gene
  EE66_RS04650 (EE66_04645) minE 946782..947015 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  EE66_RS04655 (EE66_04650) minD 947012..947818 (-) 807 WP_064431159.1 septum site-determining protein MinD -
  EE66_RS04660 (EE66_04655) ilvC 947837..948829 (-) 993 WP_064431160.1 ketol-acid reductoisomerase -
  EE66_RS04670 (EE66_04665) - 949078..949860 (+) 783 WP_064431161.1 NAD+ synthase -
  EE66_RS04675 (EE66_04670) - 949857..950795 (+) 939 WP_064431162.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15285.94 Da        Isoelectric Point: 9.5583

>NTDB_id=146212 EE66_RS04640 WP_064431157.1 945569..945973(-) (dprB) [Helicobacter pylori strain DU15]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNKSYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILECYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=146212 EE66_RS04640 WP_064431157.1 945569..945973(-) (dprB) [Helicobacter pylori strain DU15]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACAAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTTATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGTGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment