Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | AA971_RS00045 | Genome accession | NZ_CP011482 |
| Coordinates | 8786..9049 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584973.1 | Uniprot ID | G2MDJ4 |
| Organism | Helicobacter pylori strain L7 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3786..14049
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA971_RS00020 (AA971_00015) | groES | 4086..4442 (-) | 357 | WP_033767138.1 | co-chaperone GroES | - |
| AA971_RS00025 (AA971_00020) | dnaG | 4716..6395 (+) | 1680 | WP_064431742.1 | DNA primase | - |
| AA971_RS00030 (AA971_00025) | - | 6392..7444 (+) | 1053 | WP_064431743.1 | MnmA/TRMU family protein | - |
| AA971_RS00035 (AA971_00030) | - | 7533..8360 (+) | 828 | WP_064431744.1 | DUF5718 family protein | - |
| AA971_RS00040 (AA971_00035) | comB2 | 8505..8786 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| AA971_RS00045 (AA971_00040) | comB3 | 8786..9049 (+) | 264 | WP_000584973.1 | hypothetical protein | Machinery gene |
| AA971_RS00050 (AA971_00045) | comB4 | 9051..11414 (+) | 2364 | WP_064431745.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| AA971_RS00060 (AA971_00050) | - | 11735..13075 (+) | 1341 | WP_064431746.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10034.13 Da Isoelectric Point: 9.5290
>NTDB_id=146187 AA971_RS00045 WP_000584973.1 8786..9049(+) (comB3) [Helicobacter pylori strain L7]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=146187 AA971_RS00045 WP_000584973.1 8786..9049(+) (comB3) [Helicobacter pylori strain L7]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCGGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCCAAAAGCAAAATAAAGACT
AAAACCAAATGCTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCGGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCCAAAAGCAAAATAAAGACT
AAAACCAAATGCTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |