Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   AA971_RS00040 Genome accession   NZ_CP011482
Coordinates   8505..8786 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain L7     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3505..13786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA971_RS00020 (AA971_00015) groES 4086..4442 (-) 357 WP_033767138.1 co-chaperone GroES -
  AA971_RS00025 (AA971_00020) dnaG 4716..6395 (+) 1680 WP_064431742.1 DNA primase -
  AA971_RS00030 (AA971_00025) - 6392..7444 (+) 1053 WP_064431743.1 MnmA/TRMU family protein -
  AA971_RS00035 (AA971_00030) - 7533..8360 (+) 828 WP_064431744.1 DUF5718 family protein -
  AA971_RS00040 (AA971_00035) comB2 8505..8786 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  AA971_RS00045 (AA971_00040) comB3 8786..9049 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  AA971_RS00050 (AA971_00045) comB4 9051..11414 (+) 2364 WP_064431745.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  AA971_RS00060 (AA971_00050) - 11735..13075 (+) 1341 WP_064431746.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=146186 AA971_RS00040 WP_001272686.1 8505..8786(+) (comB2) [Helicobacter pylori strain L7]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=146186 AA971_RS00040 WP_001272686.1 8505..8786(+) (comB2) [Helicobacter pylori strain L7]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGGTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment