Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AA650_RS11440 Genome accession   NZ_CP011456
Coordinates   2661082..2662620 (-) Length   512 a.a.
NCBI ID   WP_053539114.1    Uniprot ID   -
Organism   Anabaena sp. WA102 isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2656082..2667620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA650_RS11425 (AA650_11470) - 2656387..2658195 (-) 1809 WP_053539112.1 bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein -
  AA650_RS11430 (AA650_11475) - 2659098..2660036 (+) 939 WP_053539113.1 phosphoribulokinase -
  AA650_RS11435 (AA650_11480) radC 2660283..2661014 (+) 732 WP_053541262.1 DNA repair protein RadC -
  AA650_RS11440 (AA650_11485) radA 2661082..2662620 (-) 1539 WP_053539114.1 DNA repair protein RadA Machinery gene
  AA650_RS11445 (AA650_11490) - 2662791..2663519 (+) 729 WP_015079764.1 response regulator transcription factor -
  AA650_RS11450 (AA650_11495) - 2663729..2664376 (+) 648 WP_053539115.1 cofactor assembly of complex C subunit B -
  AA650_RS11455 (AA650_11500) - 2664506..2665024 (+) 519 WP_053539116.1 DUF456 family protein -
  AA650_RS11460 (AA650_11505) - 2665403..2666065 (-) 663 WP_053539117.1 HEAT repeat domain-containing protein -
  AA650_RS11465 (AA650_11510) - 2666431..2666865 (-) 435 WP_053541263.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 55134.00 Da        Isoelectric Point: 4.9992

>NTDB_id=146139 AA650_RS11440 WP_053539114.1 2661082..2662620(-) (radA) [Anabaena sp. WA102 isolate]
MAKPKTIYICSNCAAEFSQWFGKCSNCDTYDSLVEQNISSFLGDIPGRGGVGNWQAGGHSKSHNKPAKARSSLTFDQISD
RQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYITGEESGQQVKLRASRLGMSKPPL
VVTEDHQNKDPEAPVTNPQQPIDPDSIGADLYILPETDLEEILREIDSLKPNVAVIDSIQTVFLPALTSAPGSVAQVREC
TAALMKVAKHEDITMLIVGHVTKEGTIAGPRVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVSQGLREV
DNPSELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYV
ASAGGLNVEEPAVDLGIAVAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPEIGI
EILPVGKVIDAIIAAVPHQELTEEDLEPDGDE

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=146139 AA650_RS11440 WP_053539114.1 2661082..2662620(-) (radA) [Anabaena sp. WA102 isolate]
ATGGCAAAGCCAAAAACCATTTATATCTGTAGTAATTGTGCAGCGGAATTCTCCCAATGGTTCGGAAAATGTTCAAATTG
TGACACTTACGATTCTTTAGTTGAGCAGAATATTAGCTCTTTTCTGGGGGATATACCTGGCCGGGGTGGTGTGGGAAATT
GGCAAGCTGGAGGTCATAGTAAATCTCACAATAAACCAGCTAAAGCTAGATCATCTCTGACTTTTGACCAAATTAGCGAT
CGCCAAATTGCTCGTTGGGAGTCCGGTTATGGCGAATTAGATCGAGTTTTAGGCGGTGGTGTTGTTCCCGGTTCAATGGT
ATTAATTGGTGGTGATCCTGGCATTGGTAAATCTACTTTACTACTACAAGTATCTAACCAATTAGCACAAAAATATCGTA
TTCTCTATATTACTGGAGAAGAGTCTGGACAACAAGTAAAATTGCGTGCTTCTCGCTTGGGAATGTCCAAACCTCCTCTT
GTCGTCACAGAAGATCATCAAAATAAAGATCCGGAAGCACCAGTGACAAATCCTCAACAACCTATAGATCCTGACAGTAT
AGGTGCGGATTTATATATATTACCAGAAACGGATTTAGAAGAAATTTTACGAGAAATAGACTCCTTAAAGCCAAATGTGG
CGGTAATAGATAGTATTCAAACCGTATTTTTACCAGCTTTGACATCAGCGCCGGGTTCAGTGGCTCAAGTCAGGGAATGT
ACCGCAGCCTTGATGAAGGTGGCAAAACATGAAGATATTACGATGTTAATTGTTGGTCATGTTACCAAAGAAGGCACGAT
TGCCGGACCGAGAGTATTAGAACACTTAGTTGATACTGTATTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGCCTAT
TAAGAACTGTAAAAAACCGTTTCGGAGCAACACACGAAATTGGTATATTTGAAATGGTGTCTCAAGGATTAAGAGAAGTT
GATAATCCTTCTGAACTATTTTTAGGCAATCGTGATGATCCGGCTCCAGGTACAGCGATTGTAGTGGCTTGTGAAGGAAC
AAGACCCATAGTAGTGGAGTTACAAGCTTTAGTTAGCCCTACTAGTTATCCCTCCCCTCGCCGAGCAGGTACAGGCATAG
ATTATAATCGGTTAGTGCAAATACTCGCCGTATTAGAAAAGCGTGTGGGTATTCCTATGTCCAAATTAGATTCCTATGTT
GCTTCTGCGGGGGGATTAAATGTAGAAGAACCAGCAGTAGATTTAGGAATTGCCGTTGCCATAGTTGCCAGTTTCCGCGA
TCGCATTGTTGATCCTGGTACAGTCTTAATTGGAGAAGTAGGATTAGGGGGACAAGTGCGATCGGTTTCCCAAATGGAAC
TACGATTAAAGGAAGCAGCAAAACTGGGATTTAAAAGAGCGATCGTTCCTAAAGGCACAAAATTTCCTGAAATTGGTATA
GAGATATTACCAGTAGGTAAAGTCATAGATGCAATTATCGCGGCTGTTCCTCATCAGGAGTTGACAGAGGAAGATTTAGA
ACCTGATGGGGATGAATAA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(89-300)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(406-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.598

97.266

0.482
  radA Streptococcus pneumoniae Rx1

46.154

93.945

0.434
  radA Streptococcus pneumoniae D39

46.154

93.945

0.434
  radA Streptococcus pneumoniae R6

46.154

93.945

0.434
  radA Streptococcus pneumoniae TIGR4

46.154

93.945

0.434
  radA Streptococcus mitis NCTC 12261

46.154

93.945

0.434
  radA Streptococcus mitis SK321

46.154

93.945

0.434

Multiple sequence alignment