Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FORC14_RS19215 Genome accession   NZ_CP011407
Coordinates   893759..894940 (-) Length   393 a.a.
NCBI ID   WP_063518082.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_014     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 888759..899940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC14_RS19200 (FORC14_3738) - 890061..890609 (+) 549 WP_005481267.1 GNAT family N-acetyltransferase -
  FORC14_RS19205 (FORC14_3739) - 890696..891313 (-) 618 WP_029839177.1 HAD family hydrolase -
  FORC14_RS19210 (FORC14_3740) cqsS 891633..893681 (+) 2049 WP_025523936.1 response regulator Regulator
  FORC14_RS19215 (FORC14_3741) cqsA 893759..894940 (-) 1182 WP_063518082.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FORC14_RS19220 (FORC14_3742) ylqF 895295..896239 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  FORC14_RS19225 (FORC14_3743) - 896528..897265 (-) 738 WP_063518083.1 EAL domain-containing protein -
  FORC14_RS19230 (FORC14_3744) - 897445..899661 (-) 2217 WP_063518084.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43824.14 Da        Isoelectric Point: 6.4984

>NTDB_id=145668 FORC14_RS19215 WP_063518082.1 893759..894940(-) (cqsA) [Vibrio parahaemolyticus strain FORC_014]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELVQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPEGSGLLQKLGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=145668 FORC14_RS19215 WP_063518082.1 893759..894940(-) (cqsA) [Vibrio parahaemolyticus strain FORC_014]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCGTTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAGAGGGGTCTGGATTATTACAAAAACTGGGACTGACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.14

98.473

0.573

Multiple sequence alignment