Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   FORC14_RS19210 Genome accession   NZ_CP011407
Coordinates   891633..893681 (+) Length   682 a.a.
NCBI ID   WP_025523936.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_014     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 886633..898681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC14_RS19190 (FORC14_3736) dcuC 886944..888311 (-) 1368 WP_005454288.1 anaerobic C4-dicarboxylate transporter DcuC -
  FORC14_RS19195 (FORC14_3737) - 888665..889789 (-) 1125 WP_029799623.1 acyl-CoA desaturase -
  FORC14_RS19200 (FORC14_3738) - 890061..890609 (+) 549 WP_005481267.1 GNAT family N-acetyltransferase -
  FORC14_RS19205 (FORC14_3739) - 890696..891313 (-) 618 WP_029839177.1 HAD family hydrolase -
  FORC14_RS19210 (FORC14_3740) cqsS 891633..893681 (+) 2049 WP_025523936.1 response regulator Regulator
  FORC14_RS19215 (FORC14_3741) cqsA 893759..894940 (-) 1182 WP_063518082.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FORC14_RS19220 (FORC14_3742) ylqF 895295..896239 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  FORC14_RS19225 (FORC14_3743) - 896528..897265 (-) 738 WP_063518083.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78259.05 Da        Isoelectric Point: 5.8750

>NTDB_id=145667 FORC14_RS19210 WP_025523936.1 891633..893681(+) (cqsS) [Vibrio parahaemolyticus strain FORC_014]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAMGEKDQYVMSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDARSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTANQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQP
GEWSQFTLTFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMADISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKAGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMDGVEASRRIRNSEKPYATVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=145667 FORC14_RS19210 WP_025523936.1 891633..893681(+) (cqsS) [Vibrio parahaemolyticus strain FORC_014]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTGCTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
TATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATCGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTGCCGATATTTTTGTTTATTTAT
GTGTTTGGCAACATGTTCTATTTCCGAAATCAGGTCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCTGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATGGGCGAAAAAGATCAGTATGTCATGAGTGGTGAAGACGTAACCTTGCTCCGTGAAGTGAGCGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACATCGATTGATGAAAACCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATTGAGAGTTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATGCAAGAAGTGAGTTTGACTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGCAGTTCAGACGAGTTTCATATTCATGTGAGTATGCAGAGTAATGACACGGCTAACCAAATTGT
AGTGACGGACAATGGCTCAGGTATCGCGCCTGATGTGATTCGACATATCTTTCAGGACTTCTATACCACAGGTAAATCGG
GCAGTTATGGTCTTGGACTACCATTCTGCAAGAAAGTCATGCGTTCATTTGGTGGTAATATTAAGTGTATTTCCCAACCG
GGAGAGTGGTCACAGTTTACGTTGACTTTTCCGCCTATCACATCAGATACGGTAACGGAAATTAAAGATGAGCTGACCAA
AATGAAATCGATTTTATTGGTCAGTAATCAAGACATTATCGTGCAAAAAATGGCTGATATTAGTCGCTTCATGGGATTTG
ATGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTTGTCGATGTG
GAAAGCCTTGATGTTTTAGAAAACCAATTAGACAGAATCGAATCGTTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAACACAAACCTGCACAACGAGCTAAAAAAGCCGGCCATGACCCGATTTGGGTAGAGACTCAAGCGTGGCTGCTAA
ACACTAAAGCTACGATTGAACGTTTGCTTTATGATTCCACTTATATCTCGTCAACCTTGCCATCTGCGCCTTTAGATAAA
TCCATCAAGCGAACCATCATGGTTGTGGATGATAACGAGTCTCTGCGTAAGTTTACGGCGATGTTACTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTGGACACTCTTGAAAAAGAAAATATCGATCTGATTTTAATGG
ATATTGAGATGCCAATCATGGACGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCAACTGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGTTAGATAAAATTGGCTCATCCGGCATGTCCGACTTTATCGTTAA
ACCCGCAGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-412)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.83

100

0.49

Multiple sequence alignment