Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   FORC14_RS13370 Genome accession   NZ_CP011406
Coordinates   2884524..2885138 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_014     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2879524..2890138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC14_RS13350 (FORC14_2632) - 2879807..2880724 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  FORC14_RS13355 (FORC14_2633) - 2880977..2882647 (-) 1671 WP_063517754.1 SulP family inorganic anion transporter -
  FORC14_RS13360 (FORC14_2634) can 2882931..2883599 (+) 669 WP_005462578.1 carbonate dehydratase -
  FORC14_RS13365 (FORC14_2635) hpt 2883675..2884205 (-) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  FORC14_RS13370 (FORC14_2636) opaR 2884524..2885138 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  FORC14_RS13375 (FORC14_2637) lpdA 2885260..2886687 (-) 1428 WP_063517755.1 dihydrolipoyl dehydrogenase -
  FORC14_RS13380 (FORC14_2638) aceF 2886956..2888842 (-) 1887 WP_063517756.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=145640 FORC14_RS13370 WP_005479697.1 2884524..2885138(+) (opaR) [Vibrio parahaemolyticus strain FORC_014]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=145640 FORC14_RS13370 WP_005479697.1 2884524..2885138(+) (opaR) [Vibrio parahaemolyticus strain FORC_014]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGAGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment