Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   lsr_RS00040 Genome accession   NZ_CP011403
Coordinates   9644..10195 (+) Length   183 a.a.
NCBI ID   WP_003703384.1    Uniprot ID   A0A1D7TQA5
Organism   Ligilactobacillus salivarius str. Ren     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4644..15195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lsr_RS00030 (LsR_00006) gyrA 6544..9096 (+) 2553 WP_047034866.1 DNA gyrase subunit A -
  lsr_RS00035 (LsR_00007) rpsF 9307..9603 (+) 297 WP_269148675.1 30S ribosomal protein S6 -
  lsr_RS00040 (LsR_00008) ssb 9644..10195 (+) 552 WP_003703384.1 single-stranded DNA-binding protein Machinery gene
  lsr_RS00045 (LsR_00009) rpsR 10217..10453 (+) 237 WP_003701427.1 30S ribosomal protein S18 -
  lsr_RS00050 (LsR_00010) - 10516..11379 (-) 864 WP_047034869.1 NAD(P)-dependent oxidoreductase -
  lsr_RS00055 (LsR_00011) - 11525..12538 (+) 1014 WP_047034871.1 glycosyltransferase family 2 protein -
  lsr_RS00060 (LsR_00012) - 12764..13546 (+) 783 WP_047036053.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20196.76 Da        Isoelectric Point: 4.4463

>NTDB_id=145597 lsr_RS00040 WP_003703384.1 9644..10195(+) (ssb) [Ligilactobacillus salivarius str. Ren]
MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQSNNSFGGNTPANNGA
DNSADPFADNGQSIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=145597 lsr_RS00040 WP_003703384.1 9644..10195(+) (ssb) [Ligilactobacillus salivarius str. Ren]
GTGATTAATAGAGCTATTCTAGTAGGTCGTTTAACAAGAGATCCTGATTTACGTTACACGGCTTCTGGAGCTGCGGTTGC
TACATTTACTGTTGCTGTAAATCGTCAATTTACTAACCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTAATGT
GGCGTAAACCAGCAGAAAATTTTGCCAACTTTACTCATAAGGGTTCATTGGTTGGGATTGACGGACGAATTCAAACTCGT
TCTTATGAAAACCAGCAAGGAACAAGAGTATATGTTACAGAAGTTGTAGCCGAGAATTTCTCATTGTTGGAATCACGTGC
CGAAGCAGATCGTTATCGTGAACAACATGGAATGACACAAAATAATTACGGAAATAATGCTCCTTCGCAAAATCAAGCAT
CACAGTTTGATAGCAATCCATTCGGTGATTCTCAATCAAATAATAGTTTTGGTGGAAATACACCAGCAAATAATGGAGCA
GATAATAGTGCTGATCCATTTGCTGATAATGGACAATCTATTGATATTTCTGATGATGACTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7TQA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.574

100

0.656
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.831

100

0.568

Multiple sequence alignment