Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | SY84_RS13985 | Genome accession | NZ_CP011389 |
| Coordinates | 2883679..2884899 (-) | Length | 406 a.a. |
| NCBI ID | WP_046844511.1 | Uniprot ID | A0A0F7JRD4 |
| Organism | Deinococcus soli (ex Cha et al. 2016) strain N5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2878679..2889899
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SY84_RS16340 | - | 2879250..2880338 (+) | 1089 | WP_157883002.1 | ATP-dependent nuclease | - |
| SY84_RS16575 | - | 2880399..2881187 (+) | 789 | WP_157883003.1 | TOPRIM nucleotidyl transferase/hydrolase domain-containing protein | - |
| SY84_RS17070 (SY84_13975) | - | 2881227..2881807 (-) | 581 | Protein_2778 | Uma2 family endonuclease | - |
| SY84_RS13975 (SY84_13980) | - | 2881855..2882187 (+) | 333 | WP_046844509.1 | hypothetical protein | - |
| SY84_RS13980 (SY84_13985) | - | 2882268..2883632 (+) | 1365 | WP_046844510.1 | S8 family peptidase | - |
| SY84_RS13985 (SY84_13990) | pilC | 2883679..2884899 (-) | 1221 | WP_046844511.1 | type II secretion system F family protein | Machinery gene |
| SY84_RS13990 (SY84_13995) | - | 2884984..2885607 (+) | 624 | WP_052751266.1 | L-threonylcarbamoyladenylate synthase | - |
| SY84_RS13995 (SY84_14000) | scpB | 2885604..2886137 (+) | 534 | WP_046844512.1 | SMC-Scp complex subunit ScpB | - |
| SY84_RS14000 (SY84_14005) | - | 2886282..2887043 (+) | 762 | WP_046844513.1 | DUF4388 domain-containing protein | - |
| SY84_RS14005 (SY84_14010) | gatA | 2887105..2888553 (+) | 1449 | WP_046844514.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA | - |
| SY84_RS14010 (SY84_14015) | truB | 2888618..2889544 (-) | 927 | WP_046844515.1 | tRNA pseudouridine(55) synthase TruB | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44306.32 Da Isoelectric Point: 9.3440
>NTDB_id=145418 SY84_RS13985 WP_046844511.1 2883679..2884899(-) (pilC) [Deinococcus soli (ex Cha et al. 2016) strain N5]
MPVFEYRVRDRSGKVLKSQMEAETANQVRDALRSKGLMIVEIKAPKSGLNADIKIPFLDNRPPSLKQVAIFSKQLATLIN
AGVPLVQSLAILQKQIDHKGFQGVVKEMRGEIEAGTPLSDALAKHPKIFNRLYLNLVRAGETSGTLDSVLERIADFQEKE
LALRGKIKSALTYPVVVLVFAILITYFLLTTIVPQFAGILAQLNAPLPFITRMLMAVSSFLQNQILLMVAIIAAVTFAYR
AYYRTPKGRVVIDEIKLKVPILGNLIQKSAIASFSRTFGLLISSGVNIIESLEITKGTANNAIVEESIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMISIGEETGSLDDMLVKVGDFYDREVDEAVDSMTAAIEPLMIVFLGGIVGMIVAGMFLPMFAI
IGQLSQ
MPVFEYRVRDRSGKVLKSQMEAETANQVRDALRSKGLMIVEIKAPKSGLNADIKIPFLDNRPPSLKQVAIFSKQLATLIN
AGVPLVQSLAILQKQIDHKGFQGVVKEMRGEIEAGTPLSDALAKHPKIFNRLYLNLVRAGETSGTLDSVLERIADFQEKE
LALRGKIKSALTYPVVVLVFAILITYFLLTTIVPQFAGILAQLNAPLPFITRMLMAVSSFLQNQILLMVAIIAAVTFAYR
AYYRTPKGRVVIDEIKLKVPILGNLIQKSAIASFSRTFGLLISSGVNIIESLEITKGTANNAIVEESIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMISIGEETGSLDDMLVKVGDFYDREVDEAVDSMTAAIEPLMIVFLGGIVGMIVAGMFLPMFAI
IGQLSQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=145418 SY84_RS13985 WP_046844511.1 2883679..2884899(-) (pilC) [Deinococcus soli (ex Cha et al. 2016) strain N5]
ATGCCCGTCTTCGAATACCGCGTGCGTGACCGCTCCGGCAAGGTGCTGAAATCCCAGATGGAAGCCGAGACGGCCAATCA
GGTCCGCGACGCCCTGCGCTCCAAGGGCCTGATGATCGTCGAGATCAAGGCCCCCAAGAGTGGACTGAACGCCGACATCA
AGATTCCCTTCCTCGACAACCGACCCCCCAGCCTGAAACAGGTCGCGATCTTCAGCAAGCAGCTCGCCACGCTGATCAAC
GCCGGGGTGCCCCTCGTACAGTCCCTCGCAATTCTGCAAAAGCAGATCGATCACAAGGGCTTCCAGGGCGTCGTCAAGGA
AATGCGCGGCGAGATCGAGGCCGGAACCCCTCTCAGTGACGCGCTGGCCAAGCATCCCAAGATCTTCAACCGGCTGTACC
TGAACCTCGTACGGGCCGGCGAGACCAGCGGCACGCTCGACTCCGTCCTCGAACGCATCGCGGATTTCCAGGAAAAGGAA
CTCGCGCTGCGCGGCAAGATCAAGAGCGCCCTGACCTACCCGGTCGTGGTTCTGGTCTTCGCCATCCTGATCACCTACTT
CCTGCTGACCACCATCGTGCCGCAGTTCGCGGGGATCCTTGCCCAGCTGAACGCACCACTGCCCTTCATCACCCGGATGC
TCATGGCCGTCTCCAGCTTCCTGCAGAATCAGATCCTTCTGATGGTCGCTATCATCGCGGCAGTGACATTCGCTTACCGC
GCCTACTACCGCACGCCCAAGGGGCGCGTCGTCATTGACGAGATCAAGTTGAAGGTCCCGATCCTCGGCAATCTGATCCA
GAAGAGTGCCATTGCGTCCTTCTCTCGTACCTTCGGCCTGCTCATCAGTAGCGGCGTCAACATCATCGAGAGTCTTGAGA
TCACCAAGGGCACCGCGAACAACGCCATCGTCGAAGAGAGCATCGAGAATGCCAAGAACGTCGTCATGGTCGGTGAGCAG
ATGAGCAGCAGCCTCGCCACCAGCAAGGTCTTCCCCCCAATGGTCGTCAGCATGATCTCCATCGGTGAAGAGACCGGTTC
GCTGGATGACATGCTGGTCAAGGTCGGGGACTTCTACGACCGCGAGGTCGACGAAGCAGTGGACAGCATGACCGCTGCGA
TTGAACCCCTGATGATCGTCTTTCTGGGGGGGATCGTCGGTATGATCGTCGCAGGGATGTTCCTCCCGATGTTCGCCATC
ATCGGCCAGCTCAGCCAGTAA
ATGCCCGTCTTCGAATACCGCGTGCGTGACCGCTCCGGCAAGGTGCTGAAATCCCAGATGGAAGCCGAGACGGCCAATCA
GGTCCGCGACGCCCTGCGCTCCAAGGGCCTGATGATCGTCGAGATCAAGGCCCCCAAGAGTGGACTGAACGCCGACATCA
AGATTCCCTTCCTCGACAACCGACCCCCCAGCCTGAAACAGGTCGCGATCTTCAGCAAGCAGCTCGCCACGCTGATCAAC
GCCGGGGTGCCCCTCGTACAGTCCCTCGCAATTCTGCAAAAGCAGATCGATCACAAGGGCTTCCAGGGCGTCGTCAAGGA
AATGCGCGGCGAGATCGAGGCCGGAACCCCTCTCAGTGACGCGCTGGCCAAGCATCCCAAGATCTTCAACCGGCTGTACC
TGAACCTCGTACGGGCCGGCGAGACCAGCGGCACGCTCGACTCCGTCCTCGAACGCATCGCGGATTTCCAGGAAAAGGAA
CTCGCGCTGCGCGGCAAGATCAAGAGCGCCCTGACCTACCCGGTCGTGGTTCTGGTCTTCGCCATCCTGATCACCTACTT
CCTGCTGACCACCATCGTGCCGCAGTTCGCGGGGATCCTTGCCCAGCTGAACGCACCACTGCCCTTCATCACCCGGATGC
TCATGGCCGTCTCCAGCTTCCTGCAGAATCAGATCCTTCTGATGGTCGCTATCATCGCGGCAGTGACATTCGCTTACCGC
GCCTACTACCGCACGCCCAAGGGGCGCGTCGTCATTGACGAGATCAAGTTGAAGGTCCCGATCCTCGGCAATCTGATCCA
GAAGAGTGCCATTGCGTCCTTCTCTCGTACCTTCGGCCTGCTCATCAGTAGCGGCGTCAACATCATCGAGAGTCTTGAGA
TCACCAAGGGCACCGCGAACAACGCCATCGTCGAAGAGAGCATCGAGAATGCCAAGAACGTCGTCATGGTCGGTGAGCAG
ATGAGCAGCAGCCTCGCCACCAGCAAGGTCTTCCCCCCAATGGTCGTCAGCATGATCTCCATCGGTGAAGAGACCGGTTC
GCTGGATGACATGCTGGTCAAGGTCGGGGACTTCTACGACCGCGAGGTCGACGAAGCAGTGGACAGCATGACCGCTGCGA
TTGAACCCCTGATGATCGTCTTTCTGGGGGGGATCGTCGGTATGATCGTCGCAGGGATGTTCCTCCCGATGTTCGCCATC
ATCGGCCAGCTCAGCCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
57.882 |
100 |
0.579 |
| pilC | Acinetobacter baumannii D1279779 |
37.313 |
99.015 |
0.369 |