Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   SY84_RS13895 Genome accession   NZ_CP011389
Coordinates   2862595..2864733 (-) Length   712 a.a.
NCBI ID   WP_081424610.1    Uniprot ID   -
Organism   Deinococcus soli (ex Cha et al. 2016) strain N5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2857595..2869733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SY84_RS13870 (SY84_13875) - 2857896..2858945 (-) 1050 WP_046844495.1 thiamine ABC transporter substrate-binding protein -
  SY84_RS13875 (SY84_13880) - 2859183..2859629 (+) 447 WP_046844496.1 NUDIX domain-containing protein -
  SY84_RS13880 (SY84_13885) - 2859626..2860087 (+) 462 WP_046844497.1 NUDIX domain-containing protein -
  SY84_RS13885 (SY84_13890) - 2860403..2860888 (+) 486 WP_046844498.1 MarR family winged helix-turn-helix transcriptional regulator -
  SY84_RS13890 (SY84_13895) - 2860885..2862507 (+) 1623 WP_046844499.1 MDR family MFS transporter -
  SY84_RS13895 (SY84_13900) comEC 2862595..2864733 (-) 2139 WP_081424610.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SY84_RS13900 (SY84_13905) comEA 2864781..2865158 (-) 378 WP_046845262.1 ComEA family DNA-binding protein Machinery gene
  SY84_RS13905 (SY84_13910) rpmH 2865486..2865629 (+) 144 WP_046844501.1 50S ribosomal protein L34 -
  SY84_RS13910 (SY84_13915) rnpA 2865700..2866200 (+) 501 WP_046844502.1 ribonuclease P protein component -
  SY84_RS13915 (SY84_13920) yidD 2866218..2866451 (+) 234 WP_046845263.1 membrane protein insertion efficiency factor YidD -
  SY84_RS13920 (SY84_13925) yidC 2866448..2868055 (+) 1608 WP_046844503.1 YidC/Oxa1 family membrane protein insertase -
  SY84_RS13925 (SY84_13930) - 2868117..2868443 (-) 327 WP_046844504.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 74682.94 Da        Isoelectric Point: 10.8967

>NTDB_id=145416 SY84_RS13895 WP_081424610.1 2862595..2864733(-) (comEC) [Deinococcus soli (ex Cha et al. 2016) strain N5]
MVGVIGGILLALGQAWGVAALLAGAGLVLWHARPVLLALVALGGAAGWASAHAVLTRPNLLTPWFGAQVTVQGDWDGQFL
TLRDPPARVTLAPKPTQGPGRLRVSGRLLAPEGRRTPGGFDQAAWFRAQGGLLSVMPGGALVGARVREFQPQGGLRGWFR
RGLTTGLTERQGALMQAIELGDRGDISREQFSEGEAVRDAFARAGLAHLMALSGQNVAILTGALILLLTRLGAAPAWRFG
LPVLLLGPYLLLVQSSASITRAVLMGGAVLLALALGRGRPDPTGVIALAALACLLLFPLWLTDVGFQLSFLAVLALTQSD
RVAGRLPERWPRWLRLGLAATLLAEAGTLPVIAGTFGQVPLVGLPANLLAGAIMALLVPLGFLAGLLGPLALPLNVVNGV
LADALLLVARTFGQAPVLSWGQVGVGGLLAYGAAVLAGWLWLLGRVRAPAALGTWLACLLLTTLPGRLHPAREVVFLDVG
QGDSTLIRLPHLTVLVDAGGSVGSDYDVGAHTVVPTLRALGVRKLDVLVATHADTDHIEGAASVLRQLPVGEVWIGQRKT
DDPVLTAVLLAAQERRVPVREVRRGDQVTSDGASLTVLWPAGTAWSTEDNDNSVALRLESRGWRAAFLGDLADLTEERLG
AGPLDLLKAAHHGSRHSTGAALLGQTSPADTVISVGRNTYGHPHQDVLTRLAQVHSRAWRTDQLGTIRWPVP

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=145416 SY84_RS13895 WP_081424610.1 2862595..2864733(-) (comEC) [Deinococcus soli (ex Cha et al. 2016) strain N5]
GTGGTGGGCGTGATCGGCGGCATCCTGCTGGCGCTGGGGCAGGCGTGGGGCGTGGCGGCGCTGCTGGCCGGCGCGGGGCT
GGTGCTGTGGCACGCCCGGCCGGTCCTACTGGCGCTGGTCGCGCTGGGCGGCGCGGCGGGCTGGGCGTCCGCGCACGCGG
TGCTGACCCGCCCGAACCTCCTGACGCCGTGGTTCGGGGCGCAGGTGACGGTGCAGGGCGACTGGGACGGGCAGTTCCTG
ACCCTGCGGGACCCGCCCGCCCGCGTGACGCTGGCGCCGAAGCCCACGCAGGGGCCGGGGCGGCTGCGGGTGTCGGGCCG
CCTGCTCGCCCCGGAGGGCCGCCGCACGCCGGGCGGGTTCGATCAGGCCGCGTGGTTCCGCGCGCAGGGGGGCCTGCTGA
GCGTCATGCCGGGCGGCGCGCTCGTGGGCGCGCGGGTGCGGGAGTTCCAGCCGCAGGGCGGTCTGCGCGGCTGGTTCCGC
CGGGGCCTGACCACGGGCCTGACCGAGCGGCAGGGCGCGCTGATGCAGGCCATCGAACTGGGCGACCGTGGGGACATCAG
CCGCGAGCAGTTCAGCGAGGGTGAGGCCGTGCGGGACGCGTTCGCGCGGGCGGGGCTGGCGCACCTGATGGCGCTGTCCG
GGCAGAACGTGGCGATCCTGACCGGTGCGCTGATCCTGCTGCTGACGCGGCTGGGCGCGGCCCCCGCGTGGCGGTTCGGG
CTGCCGGTGCTGCTGCTCGGGCCGTACCTGCTGCTCGTGCAGTCCTCGGCGAGCATCACGCGGGCTGTACTGATGGGCGG
CGCGGTGCTGCTGGCCCTGGCGCTGGGGCGCGGGCGGCCCGACCCGACCGGCGTGATCGCGCTGGCGGCGCTGGCGTGCC
TGCTGCTGTTCCCGCTGTGGCTGACAGACGTAGGCTTCCAGCTGTCGTTCCTGGCGGTGCTGGCCCTGACGCAGTCCGAC
CGGGTGGCGGGACGGCTGCCGGAACGCTGGCCGCGCTGGCTGCGGCTGGGTCTCGCGGCGACCCTGCTGGCCGAGGCCGG
GACGCTGCCAGTCATCGCGGGAACGTTCGGGCAGGTGCCGCTCGTGGGCCTGCCCGCGAACCTGCTGGCCGGGGCGATCA
TGGCCCTACTGGTCCCGCTGGGGTTCCTGGCGGGACTGCTGGGGCCGCTGGCCCTGCCGCTGAACGTGGTCAATGGCGTG
CTGGCCGACGCGCTGCTGCTGGTCGCCCGGACCTTCGGGCAGGCCCCGGTCCTGAGCTGGGGGCAGGTGGGCGTGGGAGG
ACTGCTGGCGTACGGCGCGGCCGTGCTGGCCGGGTGGCTGTGGCTGCTGGGCCGCGTCCGCGCGCCCGCCGCGCTGGGCA
CGTGGCTGGCCTGCCTGCTGCTGACGACCCTGCCGGGACGACTGCACCCCGCGCGGGAGGTGGTCTTTCTGGATGTCGGG
CAGGGGGACAGCACCCTGATCCGCCTGCCCCACCTGACGGTCCTCGTGGACGCCGGGGGTTCGGTGGGCAGTGACTACGA
CGTGGGCGCGCACACGGTCGTGCCCACCCTGCGGGCCCTGGGCGTGCGGAAACTGGACGTGCTCGTCGCCACGCACGCGG
ACACCGACCATATCGAGGGCGCCGCGAGCGTGCTGCGGCAGCTGCCGGTCGGGGAGGTCTGGATCGGGCAGCGCAAGACG
GACGATCCGGTCCTGACCGCCGTGCTGCTGGCCGCGCAGGAGAGGCGCGTGCCGGTGCGCGAGGTTCGCCGGGGCGATCA
GGTCACCTCCGACGGCGCCTCCCTGACCGTCCTGTGGCCCGCCGGGACCGCGTGGTCCACCGAGGACAACGACAACAGCG
TCGCCCTGCGCCTGGAGTCGCGCGGGTGGCGGGCCGCGTTCCTGGGCGACCTCGCGGACCTCACCGAGGAGCGGCTGGGC
GCCGGACCGCTGGACCTCCTGAAGGCCGCGCACCACGGCAGCCGCCACAGCACCGGCGCGGCCCTCCTGGGGCAGACCAG
CCCCGCCGACACCGTGATCAGCGTGGGACGGAACACCTACGGGCACCCTCACCAGGACGTGCTGACCCGCCTGGCGCAGG
TCCACTCGCGGGCGTGGCGCACCGATCAGCTGGGCACGATCCGCTGGCCTGTGCCGTGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(494-646)

Competence protein (Competence)

(195-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.417

93.539

0.631

Multiple sequence alignment