Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SY84_RS13900 Genome accession   NZ_CP011389
Coordinates   2864781..2865158 (-) Length   125 a.a.
NCBI ID   WP_046845262.1    Uniprot ID   -
Organism   Deinococcus soli (ex Cha et al. 2016) strain N5     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2859781..2870158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SY84_RS13885 (SY84_13890) - 2860403..2860888 (+) 486 WP_046844498.1 MarR family winged helix-turn-helix transcriptional regulator -
  SY84_RS13890 (SY84_13895) - 2860885..2862507 (+) 1623 WP_046844499.1 MDR family MFS transporter -
  SY84_RS13895 (SY84_13900) comEC 2862595..2864733 (-) 2139 WP_081424610.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SY84_RS13900 (SY84_13905) comEA 2864781..2865158 (-) 378 WP_046845262.1 ComEA family DNA-binding protein Machinery gene
  SY84_RS13905 (SY84_13910) rpmH 2865486..2865629 (+) 144 WP_046844501.1 50S ribosomal protein L34 -
  SY84_RS13910 (SY84_13915) rnpA 2865700..2866200 (+) 501 WP_046844502.1 ribonuclease P protein component -
  SY84_RS13915 (SY84_13920) yidD 2866218..2866451 (+) 234 WP_046845263.1 membrane protein insertion efficiency factor YidD -
  SY84_RS13920 (SY84_13925) yidC 2866448..2868055 (+) 1608 WP_046844503.1 YidC/Oxa1 family membrane protein insertase -
  SY84_RS13925 (SY84_13930) - 2868117..2868443 (-) 327 WP_046844504.1 hypothetical protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 12994.27 Da        Isoelectric Point: 11.3287

>NTDB_id=145417 SY84_RS13900 WP_046845262.1 2864781..2865158(-) (comEA) [Deinococcus soli (ex Cha et al. 2016) strain N5]
MPDRWTLLLGGAVLFAAAFTLMPALFPQPRVPTVTRVALPAATSPAPTTPEAPVYPTTTSITPLISGRVNLNSASLEQLE
ALPRVGPALASRIVAGRPYRSLADLDRVKGVGPAALKALGPLVSF

Nucleotide


Download         Length: 378 bp        

>NTDB_id=145417 SY84_RS13900 WP_046845262.1 2864781..2865158(-) (comEA) [Deinococcus soli (ex Cha et al. 2016) strain N5]
ATGCCGGACCGCTGGACGCTCCTGCTGGGCGGCGCGGTGCTGTTCGCGGCGGCGTTCACGTTGATGCCGGCCCTGTTCCC
GCAGCCGCGTGTGCCGACCGTGACCCGCGTGGCGCTGCCTGCGGCGACCTCGCCTGCGCCCACCACGCCAGAGGCGCCGG
TCTACCCCACCACGACCAGCATCACGCCGCTGATCTCCGGGCGGGTGAACCTGAATTCGGCCAGCCTGGAGCAGCTTGAA
GCCCTGCCGAGGGTCGGCCCGGCACTGGCCTCAAGGATCGTGGCGGGGCGGCCCTACCGCTCGCTGGCGGACCTGGACCG
CGTGAAGGGCGTCGGGCCAGCGGCGCTGAAGGCCCTGGGGCCGCTGGTGTCGTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.157

96.8

0.592

Multiple sequence alignment