Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | SU48_RS13220 | Genome accession | NZ_CP011387 |
| Coordinates | 2848465..2849625 (-) | Length | 386 a.a. |
| NCBI ID | WP_064015652.1 | Uniprot ID | A0A172TCN6 |
| Organism | Deinococcus puniceus strain DY1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2843465..2854625
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SU48_RS13190 (SU48_13195) | rdgB | 2843966..2844604 (+) | 639 | WP_064016053.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| SU48_RS13195 (SU48_13200) | - | 2844711..2845301 (-) | 591 | WP_231881632.1 | HNH endonuclease | - |
| SU48_RS13200 (SU48_13205) | - | 2845394..2846071 (-) | 678 | WP_082869778.1 | MarC family protein | - |
| SU48_RS13205 (SU48_13210) | - | 2846138..2846827 (-) | 690 | WP_064015649.1 | hypothetical protein | - |
| SU48_RS13210 (SU48_13215) | - | 2847055..2847459 (-) | 405 | WP_064015650.1 | Fur family transcriptional regulator | - |
| SU48_RS13215 (SU48_13220) | - | 2847819..2848373 (+) | 555 | WP_231881633.1 | VUT family protein | - |
| SU48_RS13220 (SU48_13225) | pilD | 2848465..2849625 (-) | 1161 | WP_064015652.1 | A24 family peptidase | Machinery gene |
| SU48_RS13225 (SU48_13230) | - | 2849949..2850794 (+) | 846 | WP_064015653.1 | CoA ester lyase | - |
| SU48_RS13230 (SU48_13235) | - | 2850758..2851747 (+) | 990 | WP_231881634.1 | carbohydrate kinase family protein | - |
| SU48_RS13235 (SU48_13240) | - | 2851848..2852519 (-) | 672 | WP_064015654.1 | DNA-3-methyladenine glycosylase | - |
| SU48_RS13240 (SU48_13245) | - | 2852629..2853129 (+) | 501 | WP_231881635.1 | YbaY family lipoprotein | - |
| SU48_RS13245 (SU48_13250) | - | 2853143..2854477 (-) | 1335 | WP_064015656.1 | GH1 family beta-glucosidase | - |
Sequence
Protein
Download Length: 386 a.a. Molecular weight: 40675.26 Da Isoelectric Point: 7.6276
>NTDB_id=145372 SU48_RS13220 WP_064015652.1 2848465..2849625(-) (pilD) [Deinococcus puniceus strain DY1]
MNLDVFVVVCAAVFGLLVGSFSNVLIWRLPRGENIAFPPSHCPHCDHALKPLDLVPVASWLALGGKCRYCRAPIKRRYPV
VELLTGLGYGVIAALFPLAVYGVGTLGLMVLFTLLLVASAIDLDTYTIPDELTLPGVALGLVFAFFGARAAGAEYNLPNL
PEAVNGALLGAGLLVSIDLLASWVLRRFKERQYPDFPIGYQQIGLALAAGAWLGPWWGAGVGLLAVGINLAARRVVRIPE
LLTIGGFLVSVMLGSAGYGMGLILMVQGALAAAGAVSLVAGLYWWIQFLRTAKADAPAEDDAPYDPSAMGFGDVKLAAVI
GAFLGWERLLVAVVVAVFAGALFGVVQLALKSENRVKFGPYLALGAVVALIWGAAIVESYRGMLGL
MNLDVFVVVCAAVFGLLVGSFSNVLIWRLPRGENIAFPPSHCPHCDHALKPLDLVPVASWLALGGKCRYCRAPIKRRYPV
VELLTGLGYGVIAALFPLAVYGVGTLGLMVLFTLLLVASAIDLDTYTIPDELTLPGVALGLVFAFFGARAAGAEYNLPNL
PEAVNGALLGAGLLVSIDLLASWVLRRFKERQYPDFPIGYQQIGLALAAGAWLGPWWGAGVGLLAVGINLAARRVVRIPE
LLTIGGFLVSVMLGSAGYGMGLILMVQGALAAAGAVSLVAGLYWWIQFLRTAKADAPAEDDAPYDPSAMGFGDVKLAAVI
GAFLGWERLLVAVVVAVFAGALFGVVQLALKSENRVKFGPYLALGAVVALIWGAAIVESYRGMLGL
Nucleotide
Download Length: 1161 bp
>NTDB_id=145372 SU48_RS13220 WP_064015652.1 2848465..2849625(-) (pilD) [Deinococcus puniceus strain DY1]
GTGAATCTCGACGTCTTCGTGGTGGTGTGCGCCGCCGTGTTCGGCCTGCTGGTCGGCTCGTTTTCCAATGTGCTGATCTG
GCGGCTGCCACGCGGCGAAAACATCGCCTTTCCGCCCAGCCATTGCCCGCATTGCGACCACGCCCTGAAACCCCTAGACC
TCGTGCCTGTGGCCTCTTGGCTGGCGCTGGGGGGCAAGTGCCGCTACTGCCGCGCTCCTATCAAACGGCGGTATCCGGTG
GTGGAATTGCTGACGGGCCTCGGCTACGGCGTCATCGCGGCCCTGTTTCCGCTGGCGGTCTACGGCGTGGGCACACTGGG
CCTGATGGTGCTGTTTACGCTGCTGCTGGTCGCCAGCGCCATAGACCTCGACACCTATACCATTCCCGACGAACTGACCC
TGCCCGGCGTGGCGCTGGGGCTGGTCTTCGCCTTCTTCGGGGCGCGGGCGGCGGGGGCCGAATACAACCTGCCCAACTTG
CCGGAAGCCGTGAACGGAGCGCTGCTGGGCGCGGGCCTGTTGGTCAGCATAGACCTGCTGGCTTCGTGGGTGCTGAGGCG
GTTTAAAGAACGCCAATACCCTGATTTTCCCATCGGCTACCAGCAGATTGGGCTGGCGCTGGCGGCGGGGGCGTGGCTGG
GGCCGTGGTGGGGCGCGGGCGTGGGCCTGCTGGCGGTGGGCATAAATCTGGCGGCGCGGCGTGTGGTGCGTATTCCCGAA
CTGCTGACCATCGGCGGCTTTCTGGTGAGTGTGATGCTGGGCAGCGCAGGCTACGGCATGGGCCTGATTTTGATGGTGCA
GGGCGCACTGGCCGCAGCGGGCGCGGTGTCGCTGGTGGCGGGCCTGTACTGGTGGATTCAATTTCTCCGCACAGCCAAAG
CCGATGCACCCGCCGAAGACGATGCCCCCTACGACCCCAGCGCGATGGGATTCGGCGACGTGAAACTGGCCGCCGTGATC
GGTGCGTTTTTGGGCTGGGAGCGCTTATTGGTGGCGGTGGTCGTGGCTGTCTTCGCTGGAGCCTTGTTCGGCGTCGTGCA
ACTGGCTCTCAAAAGCGAAAACCGCGTCAAGTTCGGGCCGTATCTGGCCCTCGGCGCAGTGGTGGCCCTGATCTGGGGCG
CAGCGATTGTGGAGAGCTACCGGGGAATGCTGGGACTCTAA
GTGAATCTCGACGTCTTCGTGGTGGTGTGCGCCGCCGTGTTCGGCCTGCTGGTCGGCTCGTTTTCCAATGTGCTGATCTG
GCGGCTGCCACGCGGCGAAAACATCGCCTTTCCGCCCAGCCATTGCCCGCATTGCGACCACGCCCTGAAACCCCTAGACC
TCGTGCCTGTGGCCTCTTGGCTGGCGCTGGGGGGCAAGTGCCGCTACTGCCGCGCTCCTATCAAACGGCGGTATCCGGTG
GTGGAATTGCTGACGGGCCTCGGCTACGGCGTCATCGCGGCCCTGTTTCCGCTGGCGGTCTACGGCGTGGGCACACTGGG
CCTGATGGTGCTGTTTACGCTGCTGCTGGTCGCCAGCGCCATAGACCTCGACACCTATACCATTCCCGACGAACTGACCC
TGCCCGGCGTGGCGCTGGGGCTGGTCTTCGCCTTCTTCGGGGCGCGGGCGGCGGGGGCCGAATACAACCTGCCCAACTTG
CCGGAAGCCGTGAACGGAGCGCTGCTGGGCGCGGGCCTGTTGGTCAGCATAGACCTGCTGGCTTCGTGGGTGCTGAGGCG
GTTTAAAGAACGCCAATACCCTGATTTTCCCATCGGCTACCAGCAGATTGGGCTGGCGCTGGCGGCGGGGGCGTGGCTGG
GGCCGTGGTGGGGCGCGGGCGTGGGCCTGCTGGCGGTGGGCATAAATCTGGCGGCGCGGCGTGTGGTGCGTATTCCCGAA
CTGCTGACCATCGGCGGCTTTCTGGTGAGTGTGATGCTGGGCAGCGCAGGCTACGGCATGGGCCTGATTTTGATGGTGCA
GGGCGCACTGGCCGCAGCGGGCGCGGTGTCGCTGGTGGCGGGCCTGTACTGGTGGATTCAATTTCTCCGCACAGCCAAAG
CCGATGCACCCGCCGAAGACGATGCCCCCTACGACCCCAGCGCGATGGGATTCGGCGACGTGAAACTGGCCGCCGTGATC
GGTGCGTTTTTGGGCTGGGAGCGCTTATTGGTGGCGGTGGTCGTGGCTGTCTTCGCTGGAGCCTTGTTCGGCGTCGTGCA
ACTGGCTCTCAAAAGCGAAAACCGCGTCAAGTTCGGGCCGTATCTGGCCCTCGGCGCAGTGGTGGCCCTGATCTGGGGCG
CAGCGATTGTGGAGAGCTACCGGGGAATGCTGGGACTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
69.845 |
100 |
0.702 |