Detailed information NTG0145372

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: JEONG1266_RS24890
• Genome accession: NZ_CP014314
• Coordinates: 4833312..4833980 (+)
• Length: 222 a.a.
• NCBI ID: WP_001297375.1
• Uniprot ID: P65957
• Organism: Escherichia coli O157:H7 strain JEONG-1266
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4828312..4838980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JEONG1266_RS24860 (JEONG1266_24840)	yicC	4828331..4829194 (-)	864	WP_000621336.1	YicC/YloC family endoribonuclease	-
JEONG1266_RS24865 (JEONG1266_24845)	rph	4829321..4830037 (+)	717	WP_001247093.1	ribonuclease PH	-
JEONG1266_RS24870 (JEONG1266_24850)	pyrE	4830103..4830744 (+)	642	WP_000806161.1	orotate phosphoribosyltransferase	-
JEONG1266_RS24875 (JEONG1266_24855)	slmA	4830781..4831377 (-)	597	WP_000818601.1	nucleoid occlusion factor SlmA	-
JEONG1266_RS24880 (JEONG1266_24860)	dut	4831484..4831942 (-)	459	WP_000976070.1	dUTP diphosphatase	-
JEONG1266_RS24885 (JEONG1266_24865)	coaBC	4831920..4833140 (-)	1221	WP_000050139.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
JEONG1266_RS24890 (JEONG1266_24870)	radC	4833312..4833980 (+)	669	WP_001297375.1	DNA repair protein RadC	Machinery gene
JEONG1266_RS24895 (JEONG1266_24875)	rpmB	4834197..4834433 (+)	237	WP_000091955.1	50S ribosomal protein L28	-
JEONG1266_RS24900 (JEONG1266_24880)	rpmG	4834454..4834621 (+)	168	WP_001051798.1	50S ribosomal protein L33	-
JEONG1266_RS24905 (JEONG1266_24885)	mutM	4834719..4835528 (+)	810	WP_001114533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
JEONG1266_RS24910 (JEONG1266_24890)	coaD	4835567..4836046 (-)	480	WP_001171866.1	pantetheine-phosphate adenylyltransferase	-
JEONG1266_RS24915 (JEONG1266_24895)	waaA	4836054..4837331 (-)	1278	WP_000891564.1	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	-
JEONG1266_RS24920 (JEONG1266_24900)	rfaQ	4837744..4838802 (+)	1059	WP_000360402.1	lipopolysaccharide core heptosyltransferase RfaQ	-

Sequence

Protein

• Length: 222 a.a.
• Molecular weight: 25258.35 Da
• Isoelectric Point: 7.9748

>NTDB_id=145372 JEONG1266_RS24890 WP_001297375.1 4833312..4833980(+) (radC) [Escherichia coli O157:H7 strain JEONG-1266]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide

• Length: 669 bp

>NTDB_id=145372 JEONG1266_RS24890 WP_001297375.1 4833312..4833980(+) (radC) [Escherichia coli O157:H7 strain JEONG-1266]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-220)

• UPF0758 N-terminal (UPF0758_N) (9-77)

3D structure

• AlphaFold DB: P65957

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	49.55	100	0.496