Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IJ00_RS17910 Genome accession   NZ_CP011382
Coordinates   4292777..4294315 (+) Length   512 a.a.
NCBI ID   WP_035155153.1    Uniprot ID   A0A0T7BVK5
Organism   Calothrix sp. 336/3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4287777..4299315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IJ00_RS17880 (IJ00_17845) - 4288260..4289015 (+) 756 WP_035155140.1 LEVG family PEP-CTERM protein -
  IJ00_RS17885 (IJ00_17850) - 4289539..4290297 (+) 759 WP_035155142.1 LEVG family PEP-CTERM protein -
  IJ00_RS17890 (IJ00_17855) - 4290414..4290932 (-) 519 WP_035155146.1 DUF456 domain-containing protein -
  IJ00_RS17895 (IJ00_17860) - 4290991..4291644 (-) 654 WP_035155147.1 cofactor assembly of complex C subunit B -
  IJ00_RS17905 (IJ00_17870) rpaB 4291877..4292605 (-) 729 WP_035155151.1 response regulator transcription factor RpaB -
  IJ00_RS17910 (IJ00_17875) radA 4292777..4294315 (+) 1539 WP_035155153.1 DNA repair protein RadA Machinery gene
  IJ00_RS17915 (IJ00_17880) bioD 4294584..4295264 (+) 681 WP_035155155.1 dethiobiotin synthase -
  IJ00_RS17920 (IJ00_17885) - 4295291..4296166 (-) 876 WP_035155158.1 DUF4388 domain-containing protein -
  IJ00_RS17925 (IJ00_17890) - 4296786..4297655 (+) 870 WP_238178359.1 DUF6816 family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 55020.74 Da        Isoelectric Point: 5.5033

>NTDB_id=145332 IJ00_RS17910 WP_035155153.1 4292777..4294315(+) (radA) [Calothrix sp. 336/3]
MAKQKTYFVCNQCGAESPQWFGKCPACGTYNSLEEHVAIQSSTDVPSRGISNWHSQQGGAKSGNKPAKPRASLTFDQISD
RHVTRWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYISGEESGQQVKLRASRLGVTKSLT
VAGTDNGNGHGNGKVDDKTLPEISAEVPSPDLYVLPETDLEEILKEIESLKPNLAVIDSIQTVYFPNLTSAPGSVAQVRE
CTAALMKVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVDHGLRE
VPNPSELFLGNRDDPAPGSAIVVACEGTRPIVVELQALVSPTSYTSPRRSTTGVDYNRLVQILAVLEKRVGIPMSKLDSY
VASVGGLNVEEPAVDLGVAIAIVASFRDRIVDPGTVLIGEVGLGGQVRAVSQMELRLKEAAKLGFTRAIVPKGQKFPDLN
IEILPVAKVIDAIIAAIPQHSLEDSDLEPDED

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=145332 IJ00_RS17910 WP_035155153.1 4292777..4294315(+) (radA) [Calothrix sp. 336/3]
ATGGCAAAGCAAAAAACCTACTTTGTTTGCAATCAGTGTGGTGCCGAGTCTCCCCAGTGGTTTGGGAAATGCCCTGCTTG
TGGTACATATAATTCTTTAGAAGAGCATGTGGCAATTCAATCATCAACGGATGTACCTAGTCGGGGAATCAGTAATTGGC
ATTCGCAACAAGGTGGGGCAAAATCAGGGAATAAACCAGCCAAACCGCGCGCATCTTTAACTTTTGACCAAATTAGCGAT
CGCCATGTAACACGCTGGGAATCCGGTTATGGGGAACTGGATCGGGTGTTAGGTGGTGGTGTGGTTCCAGGTTCAATGGT
ATTAATTGGTGGTGACCCAGGGATTGGTAAATCTACGCTGTTATTACAAGTATCTAATCAACTGGCGCAAAAATATCGTA
TTTTATATATTTCTGGGGAAGAATCGGGACAACAGGTGAAATTGCGTGCTTCTCGTCTCGGTGTGACTAAAAGTCTCACT
GTCGCGGGTACGGATAATGGGAATGGTCATGGCAATGGTAAGGTAGATGACAAAACATTACCGGAAATTTCCGCAGAAGT
CCCATCTCCTGATTTATATGTGTTACCGGAGACAGACTTAGAGGAGATTCTCAAGGAAATTGAGTCTCTGAAGCCGAATT
TAGCAGTTATTGACAGTATTCAAACAGTTTATTTTCCTAATTTGACATCTGCGCCCGGTTCGGTAGCACAAGTCCGAGAA
TGTACTGCTGCTCTGATGAAAGTGGCAAAGCATGAAGATATTACCATGTTAATTGTGGGACACGTCACCAAAGAAGGGGC
GATCGCGGGACCAAAAGTTTTAGAACACTTGGTAGATACGGTGTTGTATTTTGAGGGCGATCGCTTTGCTTCCCATCGGT
TATTACGGACTGTGAAAAACCGTTTCGGAGCCACCCATGAAATTGGTATCTTTGAAATGGTAGACCACGGATTGCGAGAA
GTTCCCAATCCCAGTGAGTTGTTCCTAGGTAATCGAGATGATCCTGCTCCTGGAAGTGCGATTGTTGTTGCCTGTGAGGG
AACTCGTCCTATTGTTGTAGAATTACAAGCATTAGTTAGTCCGACTAGTTACACTTCTCCCCGACGTTCGACTACAGGTG
TGGATTATAATCGCTTGGTGCAAATTCTGGCGGTGCTAGAAAAGCGTGTAGGTATACCCATGTCTAAGCTTGATTCCTAT
GTTGCTTCCGTGGGGGGGTTGAATGTAGAAGAACCCGCAGTCGATTTAGGGGTGGCGATCGCCATTGTTGCTAGTTTCCG
TGACAGAATTGTCGATCCTGGTACAGTATTAATTGGAGAGGTGGGTTTGGGGGGACAGGTGCGAGCAGTTTCCCAAATGG
AATTAAGATTAAAAGAAGCCGCGAAATTGGGTTTCACTAGGGCGATCGTTCCTAAGGGACAGAAATTTCCCGATTTAAAT
ATTGAGATTTTACCAGTTGCCAAGGTAATTGATGCCATTATTGCTGCCATTCCCCAGCATTCCTTAGAAGATAGCGATTT
AGAGCCAGATGAGGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(410-472)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(89-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7BVK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.402

97.266

0.49
  radA Streptococcus mitis SK321

46.774

96.875

0.453
  radA Streptococcus pneumoniae Rx1

48.517

92.188

0.447
  radA Streptococcus pneumoniae D39

48.517

92.188

0.447
  radA Streptococcus pneumoniae R6

48.517

92.188

0.447
  radA Streptococcus pneumoniae TIGR4

48.517

92.188

0.447
  radA Streptococcus mitis NCTC 12261

48.517

92.188

0.447

Multiple sequence alignment