Detailed information NTG0145213

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: DHB4_RS20020
• Genome accession: NZ_CP014270
• Coordinates: 4029012..4030037 (-)
• Length: 341 a.a.
• NCBI ID: WP_061066762.1
• Uniprot ID: -
• Organism: Escherichia coli K-12 strain K-12 DHB4
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4024012..4035037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DHB4_RS19990 (DHB4_20015)	zapB	4024096..4024341 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
DHB4_RS19995 (DHB4_20020)	rraA	4024426..4024911 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
DHB4_RS20000 (DHB4_20025)	menA	4025004..4025930 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
DHB4_RS20005 (DHB4_20030)	hslU	4025997..4027328 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
DHB4_RS20010 (DHB4_20035)	hslV	4027338..4027868 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
DHB4_RS20015 (DHB4_20040)	ftsN	4027961..4028920 (-)	960	WP_000068828.1	cell division protein FtsN	-
DHB4_RS20020 (DHB4_20045)	cytR	4029012..4030037 (-)	1026	WP_061066762.1	DNA-binding transcriptional regulator CytR	Regulator
DHB4_RS20025 (DHB4_20050)	priA	4030193..4032391 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
DHB4_RS20030 (DHB4_20055)	rpmE	4032594..4032806 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
DHB4_RS20035 (DHB4_20060)	yiiX	4032867..4033475 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
DHB4_RS20040 (DHB4_20065)	metJ	4033659..4033976 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37877.82 Da
• Isoelectric Point: 6.1637

>NTDB_id=145213 DHB4_RS20020 WP_061066762.1 4029012..4030037(-) (cytR) [Escherichia coli K-12 strain K-12 DHB4]
MKAKKQETAATMKDVALKEKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=145213 DHB4_RS20020 WP_061066762.1 4029012..4030037(-) (cytR) [Escherichia coli K-12 strain K-12 DHB4]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGAAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625