Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAT17_RS06855 Genome accession   NZ_CP011373
Coordinates   1462420..1463790 (-) Length   456 a.a.
NCBI ID   WP_060523394.1    Uniprot ID   A0AAI8G0A1
Organism   Nonlabens sp. MIC269     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1457420..1468790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAT17_RS06830 (AAT17_06830) - 1458140..1459531 (-) 1392 WP_082586921.1 undecaprenyl-phosphate glucose phosphotransferase -
  AAT17_RS06835 (AAT17_06835) - 1459494..1460483 (-) 990 WP_060523391.1 UDP-glucuronic acid decarboxylase family protein -
  AAT17_RS06840 (AAT17_06840) - 1460523..1461155 (-) 633 WP_060523392.1 peptidoglycan DD-metalloendopeptidase family protein -
  AAT17_RS06845 (AAT17_06845) - 1461167..1461823 (-) 657 WP_042276486.1 CoA transferase subunit B -
  AAT17_RS06850 (AAT17_06850) - 1461867..1462409 (-) 543 WP_060523393.1 TlpA disulfide reductase family protein -
  AAT17_RS06855 (AAT17_06855) radA 1462420..1463790 (-) 1371 WP_060523394.1 DNA repair protein RadA Machinery gene
  AAT17_RS06860 (AAT17_06860) - 1463790..1464956 (-) 1167 WP_060523395.1 alpha/beta hydrolase -
  AAT17_RS06865 (AAT17_06865) - 1464998..1465966 (-) 969 WP_060523396.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  AAT17_RS06870 (AAT17_06870) panD 1465970..1466320 (-) 351 WP_042276495.1 aspartate 1-decarboxylase -
  AAT17_RS06875 (AAT17_06875) panC 1466387..1467241 (-) 855 WP_060525035.1 pantoate--beta-alanine ligase -
  AAT17_RS06880 (AAT17_06880) - 1467350..1468177 (+) 828 WP_042276500.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50194.60 Da        Isoelectric Point: 7.8342

>NTDB_id=145214 AAT17_RS06855 WP_060523394.1 1462420..1463790(-) (radA) [Nonlabens sp. MIC269]
MAKVKTTWYCQNCGAQYAKWQGQCTTCKKWDSLVEEVVQKEQTPSWQTDDAPGTLSRKRNSKPQRISEINAQESPRLDTT
NLEFNRVLGGGLVPGSVTLLGGEPGIGKSTLLLQVCLNLPFKTLYVSGEESAQQIKMRADRINKNAENCYILTETKTQNI
FKQVSDIEPDVLIIDSIQTLQTQHIESTAGSVSQIRECTGELIKFAKQTATPVIVIGHITKDGHIAGPKILEHMVDTVLQ
FEGDRNHTYRILRALKNRFGSTHEIGIYEMLGHGLREVTNPSEILIANKDLEISGTAIAATMEGMRPLMIEVQALVSTAV
YGTPQRSATGYNLKRLNMILAVLEKRAGFKLGQKDVFLNITGGINVDDPAIDLAVVAAILSSNFDIALNPKHCFSAEVGL
GGEIRTASRMEQRINEAGKLGFDRICIAPAKQSFKNSTAQVVAFSKIEDLVRYLFA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=145214 AAT17_RS06855 WP_060523394.1 1462420..1463790(-) (radA) [Nonlabens sp. MIC269]
ATGGCAAAAGTAAAGACAACGTGGTACTGTCAAAATTGTGGTGCCCAGTACGCAAAATGGCAAGGACAATGCACCACCTG
TAAAAAGTGGGATTCTTTAGTAGAAGAAGTAGTTCAAAAAGAGCAAACTCCTAGTTGGCAAACAGATGATGCTCCAGGTA
CGCTTTCGCGAAAGCGTAATTCAAAACCTCAACGCATTTCCGAAATAAATGCTCAAGAAAGTCCACGGTTGGATACTACT
AATCTAGAATTCAATAGAGTGCTAGGTGGTGGATTGGTTCCTGGATCGGTTACCTTGCTAGGTGGTGAACCAGGTATAGG
TAAATCAACACTATTGTTGCAAGTGTGTTTGAATCTGCCTTTTAAAACTTTGTATGTAAGTGGTGAGGAAAGTGCGCAAC
AAATAAAAATGCGAGCAGATCGTATTAACAAAAACGCCGAAAATTGCTACATACTCACTGAGACAAAGACTCAAAACATT
TTTAAACAAGTAAGTGATATTGAGCCTGATGTTTTAATAATCGATTCGATTCAAACTTTACAAACACAACACATAGAAAG
TACCGCAGGTAGTGTTTCACAAATAAGAGAATGTACAGGTGAATTAATAAAATTTGCCAAACAAACAGCTACTCCCGTTA
TTGTAATAGGTCACATTACAAAAGACGGTCACATTGCTGGACCTAAAATTCTTGAGCACATGGTAGACACCGTGCTACAA
TTTGAAGGAGATCGCAATCATACGTATAGAATTTTGCGAGCTCTTAAAAACCGTTTTGGTAGCACTCATGAAATAGGTAT
TTATGAAATGTTAGGCCATGGATTGCGTGAAGTAACTAATCCTAGTGAAATATTGATTGCAAACAAAGATCTTGAAATTA
GTGGAACCGCAATTGCAGCTACGATGGAAGGTATGCGACCACTTATGATCGAGGTTCAAGCACTAGTAAGTACGGCTGTT
TATGGAACACCACAACGCAGTGCAACGGGTTATAATTTAAAACGTCTTAATATGATACTAGCAGTCCTAGAAAAAAGGGC
AGGATTCAAATTAGGTCAAAAGGATGTTTTTCTAAACATTACTGGTGGTATTAATGTTGATGATCCAGCAATCGACCTTG
CAGTGGTCGCAGCTATATTATCATCAAATTTTGATATAGCACTCAATCCCAAACACTGTTTCAGTGCTGAGGTTGGTCTG
GGCGGAGAAATAAGAACAGCTAGTAGAATGGAGCAACGTATTAATGAAGCTGGTAAATTAGGCTTTGATAGAATTTGTAT
TGCACCAGCCAAACAAAGTTTTAAAAACTCTACTGCTCAGGTTGTTGCCTTTTCAAAAATTGAAGACTTAGTTAGATATC
TTTTTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.485

100

0.491
  radA Streptococcus mitis SK321

48.485

100

0.491
  radA Streptococcus mitis NCTC 12261

48.485

100

0.491
  radA Streptococcus pneumoniae TIGR4

48.485

100

0.491
  radA Streptococcus pneumoniae D39

48.485

100

0.491
  radA Streptococcus pneumoniae R6

48.485

100

0.491
  radA Bacillus subtilis subsp. subtilis str. 168

49.885

94.956

0.474

Multiple sequence alignment