Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CD56_RS04905 Genome accession   NZ_CP011372
Coordinates   931085..931852 (-) Length   255 a.a.
NCBI ID   WP_047208372.1    Uniprot ID   -
Organism   Campylobacter lari strain Slaughter Beach     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 926085..936852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD56_RS04880 (CD56_04865) flhA 926624..928783 (-) 2160 WP_039618502.1 flagellar biosynthesis protein FlhA -
  CD56_RS04885 (CD56_04870) - 928776..929180 (-) 405 WP_039618504.1 Rrf2 family transcriptional regulator -
  CD56_RS04890 (CD56_04875) rpsO 929358..929630 (+) 273 WP_047208369.1 30S ribosomal protein S15 -
  CD56_RS04895 (CD56_04880) - 929822..930715 (-) 894 WP_047208370.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CD56_RS04900 (CD56_04885) ruvX 930702..931088 (-) 387 WP_047208371.1 Holliday junction resolvase RuvX -
  CD56_RS04905 (CD56_04890) dprA 931085..931852 (-) 768 WP_047208372.1 DNA-processing protein DprA Machinery gene
  CD56_RS04910 (CD56_04895) - 931839..932906 (-) 1068 WP_235375831.1 divergent polysaccharide deacetylase family protein -
  CD56_RS04915 (CD56_04900) ilvC 932908..933930 (-) 1023 WP_012661655.1 ketol-acid reductoisomerase -
  CD56_RS04920 (CD56_04905) - 934039..935979 (+) 1941 WP_047208373.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28709.31 Da        Isoelectric Point: 6.8617

>NTDB_id=145202 CD56_RS04905 WP_047208372.1 931085..931852(-) (dprA) [Campylobacter lari strain Slaughter Beach]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAIIGSRKMSVYTKNCLVELVTLLKKTKVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVVIAQADLKSGSMQSARLA
LGMNKSIYVLPHRKNESEGTNLLLATKKANLIHDFDEFVKMFGEFHQEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=145202 CD56_RS04905 WP_047208372.1 931085..931852(-) (dprA) [Campylobacter lari strain Slaughter Beach]
ATGAAATTTATTGAGAATATTGAAGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAAGGCAATTTAGA
GCTTTTAAATGCTAGAAAAGTGGCTATTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGTCTTGTTGAATTGG
TGACTTTGTTAAAAAAAACTAAGGTTTGTGTAGTAAGTGGCGGGGCTTTAGGGGTGGATATCCAAGCAGCTAAAATAGCC
TATCCTCAAACTATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTGGCTTTAAGTGAAAATGAAGGAAATTATAAGGCAAAGCCTTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGTGAGGTTGTTGTAATAGCCCAGGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAATCTATATATGTATTACCTCATAGGAAAAATGAAAGCGAAGGAACAAATTTGCTTTTAGCCACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGTAAAAATGTTTGGAGAGTTTCATCAAGAGCAAAGCGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTAGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.776

90.98

0.553
  dprA Helicobacter pylori 26695

44.355

97.255

0.431

Multiple sequence alignment