Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   TVD_RS12800 Genome accession   NZ_CP011367
Coordinates   2754138..2755145 (+) Length   335 a.a.
NCBI ID   WP_047251764.1    Uniprot ID   A0A0G3G9I6
Organism   Thioalkalivibrio versutus strain D301     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2749138..2760145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TVD_RS12785 (TVD_12785) rsmD 2750727..2751338 (-) 612 WP_047251762.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  TVD_RS12790 (TVD_12790) - 2751325..2752623 (-) 1299 WP_047251763.1 M16 family metallopeptidase -
  TVD_RS12795 (TVD_12795) - 2752638..2754058 (-) 1421 Protein_2562 M16 family metallopeptidase -
  TVD_RS12800 (TVD_12800) pilA 2754138..2755145 (+) 1008 WP_047251764.1 signal recognition particle-docking protein FtsY Machinery gene
  TVD_RS12805 (TVD_12805) ftsE 2755158..2755835 (+) 678 WP_018145094.1 cell division ATP-binding protein FtsE -
  TVD_RS12810 (TVD_12810) - 2755832..2756761 (+) 930 WP_047251765.1 cell division protein FtsX -
  TVD_RS12815 (TVD_12815) rpoH 2756864..2757730 (+) 867 WP_018145092.1 RNA polymerase sigma factor RpoH -
  TVD_RS15005 - 2757852..2757977 (-) 126 WP_276202103.1 hypothetical protein -
  TVD_RS12820 (TVD_12820) ccoS 2758032..2758250 (-) 219 WP_018937415.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36055.01 Da        Isoelectric Point: 4.8838

>NTDB_id=145171 TVD_RS12800 WP_047251764.1 2754138..2755145(+) (pilA) [Thioalkalivibrio versutus strain D301]
MFGFRKKKSEDPATPDAEAPGSEPDKPARGGWFQRLRKGLAKTGQVLGGDLGSLLRRKIDDELFEELEERLLLADVGLDA
TQRIMDRITREVKRGQLDDAEALMDALEAAMIEILEPVSRPLEIPEAERPFSILVVGINGAGKTTTIGKLAHHLQANDRS
VLLAAGDTFRAAAVEQLQTWGERNGAPVIAQGTGADSASVVYDGLQAAQARGIDVMIADTAGRLHTQTNLMDEVRKVKRV
MGRLDEHAPDEVLLVVDGGTGQNALNQARQFHEALGLTGIVVTKLDGTAKGGVLFALAEQLGIPVRFIGVGEKAEDLQVF
DARAFVRALLGRDSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=145171 TVD_RS12800 WP_047251764.1 2754138..2755145(+) (pilA) [Thioalkalivibrio versutus strain D301]
ATGTTCGGTTTCCGCAAAAAGAAGTCCGAAGACCCGGCCACCCCCGACGCGGAGGCACCTGGCAGCGAGCCGGACAAGCC
CGCCCGCGGCGGCTGGTTCCAGCGCCTGCGCAAGGGCCTGGCCAAGACCGGGCAGGTCCTGGGCGGCGACCTGGGGTCGC
TGCTCCGGCGCAAGATCGACGACGAACTGTTCGAGGAGCTGGAAGAACGCCTGCTCCTCGCGGACGTGGGCCTGGATGCG
ACCCAGCGGATCATGGATCGTATCACCCGCGAGGTGAAACGCGGACAACTGGATGACGCCGAGGCCCTGATGGACGCCCT
GGAGGCGGCCATGATCGAGATCCTCGAGCCGGTCTCGCGCCCCCTGGAGATCCCGGAGGCCGAACGCCCCTTCTCCATCC
TCGTCGTCGGTATCAACGGGGCCGGCAAGACCACCACCATCGGCAAGCTGGCCCATCACCTGCAGGCGAACGATCGCTCG
GTGCTGCTGGCGGCCGGCGACACCTTCCGCGCTGCCGCGGTGGAACAACTGCAGACCTGGGGCGAGCGCAATGGCGCTCC
GGTGATCGCCCAGGGCACCGGGGCGGATTCCGCCTCGGTGGTCTACGACGGCCTGCAGGCCGCGCAGGCGCGCGGCATCG
ACGTGATGATTGCCGACACCGCCGGGCGCCTGCACACCCAGACCAACCTGATGGACGAGGTCCGCAAGGTGAAGCGCGTG
ATGGGCCGGCTGGACGAACACGCCCCGGACGAGGTCCTGCTGGTGGTGGACGGCGGCACCGGCCAGAACGCCCTGAACCA
GGCCCGTCAGTTCCACGAGGCCCTGGGCCTGACCGGAATCGTCGTGACCAAGCTGGACGGCACGGCCAAGGGCGGCGTGC
TGTTCGCGCTGGCCGAACAGCTGGGCATTCCGGTGCGCTTCATCGGGGTCGGGGAAAAGGCCGAGGATCTACAGGTCTTC
GATGCCCGCGCCTTTGTGCGCGCCCTGCTCGGCCGCGATAGCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(131-331)

SRP54-type protein, helical bundle domain (SRP54_N)

(47-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3G9I6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.821

89.851

0.484

Multiple sequence alignment