Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   TVD_RS12635 Genome accession   NZ_CP011367
Coordinates   2722700..2723116 (-) Length   138 a.a.
NCBI ID   WP_018175663.1    Uniprot ID   -
Organism   Thioalkalivibrio versutus strain D301     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2717700..2728116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TVD_RS12620 (TVD_12620) - 2719587..2721674 (-) 2088 WP_047251741.1 methyl-accepting chemotaxis protein -
  TVD_RS12625 (TVD_12625) - 2721714..2722292 (-) 579 WP_018145130.1 chemotaxis protein CheW -
  TVD_RS12630 (TVD_12630) - 2722289..2722654 (-) 366 WP_018145129.1 response regulator -
  TVD_RS12635 (TVD_12635) pilG 2722700..2723116 (-) 417 WP_018175663.1 twitching motility response regulator PilG Regulator
  TVD_RS12640 (TVD_12640) gshB 2723300..2724250 (+) 951 WP_047251978.1 glutathione synthase -
  TVD_RS12645 (TVD_12645) - 2724256..2725293 (+) 1038 WP_047251742.1 FAD:protein FMN transferase -
  TVD_RS12650 (TVD_12650) - 2725290..2725664 (+) 375 WP_018937388.1 NusG domain II-containing protein -
  TVD_RS12655 (TVD_12655) - 2725675..2726223 (+) 549 WP_018937389.1 Gx transporter family protein -
  TVD_RS12660 (TVD_12660) - 2726380..2727252 (+) 873 WP_240472316.1 energy transducer TonB -
  TVD_RS12665 (TVD_12665) - 2727344..2727922 (+) 579 WP_047251744.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15217.48 Da        Isoelectric Point: 6.9836

>NTDB_id=145168 TVD_RS12635 WP_018175663.1 2722700..2723116(-) (pilG) [Thioalkalivibrio versutus strain D301]
MSNALAEADSATEFQGLKVMVIDDSKTIRRTAESLLQKHGAEVITAVDGFEALSKVAQSRPDIIFIDVMMPRLDGYQTCA
LIKNNREFRATPIIMLSSKDSVFDKAKGRVVGSEDYLTKPFTRDDLLGAMRRYASPAA

Nucleotide


Download         Length: 417 bp        

>NTDB_id=145168 TVD_RS12635 WP_018175663.1 2722700..2723116(-) (pilG) [Thioalkalivibrio versutus strain D301]
GTGTCTAACGCGCTTGCCGAAGCGGACTCGGCCACCGAGTTTCAGGGGCTCAAGGTCATGGTGATCGATGACAGCAAGAC
CATTCGGCGTACCGCCGAATCCTTGCTGCAGAAGCACGGGGCCGAAGTCATCACCGCCGTGGACGGCTTCGAGGCGCTGT
CCAAGGTCGCGCAGTCGCGCCCGGACATTATCTTCATCGACGTCATGATGCCGCGTCTGGATGGCTACCAGACCTGCGCA
CTGATCAAGAACAACAGGGAATTCCGTGCCACGCCGATCATCATGCTGTCGAGCAAGGACAGCGTGTTCGACAAGGCGAA
GGGGCGCGTTGTGGGGTCGGAGGACTACCTCACCAAGCCGTTTACCCGGGATGACCTCCTGGGCGCCATGCGCCGATACG
CCAGTCCTGCGGCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(19-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72.951

88.406

0.645
  vicR Streptococcus mutans UA159

43.103

84.058

0.362

Multiple sequence alignment