Detailed information NTG0144960

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: AAV30_RS17245
• Genome accession: NZ_CP011347
• Coordinates: 3614678..3615826 (-)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain YJ11-1-4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3609678..3620826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAV30_RS17220 (AAV30_17220)	-	3609817..3610575 (-)	759	WP_003156330.1	ABC transporter ATP-binding protein	-
AAV30_RS17225 (AAV30_17225)	-	3610569..3611516 (-)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
AAV30_RS17230 (AAV30_17230)	ceuB	3611506..3612459 (-)	954	WP_015239156.1	ABC transporter permease	Machinery gene
AAV30_RS17235 (AAV30_17235)	-	3612873..3614237 (+)	1365	WP_042634827.1	aspartate kinase	-
AAV30_RS19860	-	3614317..3614427 (+)	111	WP_369878517.1	YjcZ family sporulation protein	-
AAV30_RS17240 (AAV30_17240)	phrC	3614575..3614694 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
AAV30_RS17245 (AAV30_17245)	rapC	3614678..3615826 (-)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
AAV30_RS17250 (AAV30_17250)	-	3615979..3617412 (-)	1434	WP_020953885.1	ATP-binding protein	-
AAV30_RS17255 (AAV30_17255)	-	3617399..3618082 (-)	684	WP_007410267.1	response regulator transcription factor	-
AAV30_RS17260 (AAV30_17260)	-	3618295..3619731 (+)	1437	WP_039062609.1	ABC transporter permease	-
AAV30_RS17265 (AAV30_17265)	-	3619746..3620429 (+)	684	WP_046702372.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=144960 AAV30_RS17245 WP_007410270.1 3614678..3615826(-) (rapC) [Bacillus velezensis strain YJ11-1-4]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=144960 AAV30_RS17245 WP_007410270.1 3614678..3615826(-) (rapC) [Bacillus velezensis strain YJ11-1-4]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATATATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTATTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAGGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568