Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AAV30_RS01745 Genome accession   NZ_CP011347
Coordinates   349825..349944 (-) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus velezensis strain YJ11-1-4     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 344825..354944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS01700 (AAV30_01700) speE 345225..346055 (+) 831 WP_038464362.1 spermidine synthase -
  AAV30_RS01705 (AAV30_01705) speB 346114..346986 (+) 873 WP_007614448.1 agmatinase -
  AAV30_RS01710 (AAV30_01710) - 347155..347373 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  AAV30_RS01720 (AAV30_01720) - 347964..348476 (-) 513 WP_007614439.1 stage II sporulation protein M -
  AAV30_RS01725 (AAV30_01725) - 348520..348801 (-) 282 WP_007407643.1 hypothetical protein -
  AAV30_RS01730 (AAV30_01730) - 348988..349172 (-) 185 Protein_346 DUF4177 domain-containing protein -
  AAV30_RS01735 (AAV30_01735) - 349207..349410 (-) 204 WP_007407641.1 hypothetical protein -
  AAV30_RS01740 (AAV30_01740) - 349424..349627 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  AAV30_RS01745 (AAV30_01745) phrF 349825..349944 (-) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AAV30_RS01750 (AAV30_01750) rapF 349928..351073 (-) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  AAV30_RS01755 (AAV30_01755) - 351304..352659 (+) 1356 WP_038460212.1 YncE family protein -
  AAV30_RS01760 (AAV30_01760) - 352699..354075 (+) 1377 WP_046702210.1 YncE family protein -
  AAV30_RS01765 (AAV30_01765) - 354082..354594 (-) 513 Protein_353 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=144900 AAV30_RS01745 WP_007407639.1 349825..349944(-) (phrF) [Bacillus velezensis strain YJ11-1-4]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=144900 AAV30_RS01745 WP_007407639.1 349825..349944(-) (phrF) [Bacillus velezensis strain YJ11-1-4]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment