Detailed information NTG0144877

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AXF35_RS07760
• Genome accession: NZ_CP014255
• Coordinates: 1678327..1679190 (+)
• Length: 287 a.a.
• NCBI ID: WP_027221711.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pascullei strain F-4185
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1673327..1684190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AXF35_RS07740 (AXF35_09085)	-	1673765..1674091 (-)	327	WP_027221707.1	DUF1820 family protein	-
AXF35_RS07745 (AXF35_09080)	-	1674276..1675019 (-)	744	WP_027221708.1	methyltransferase domain-containing protein	-
AXF35_RS07750 (AXF35_09075)	pilB	1675333..1677057 (+)	1725	WP_027221709.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AXF35_RS07755 (AXF35_09070)	pilC	1677063..1678283 (+)	1221	WP_027221710.1	type II secretion system F family protein	Machinery gene
AXF35_RS07760 (AXF35_09065)	pilD	1678327..1679190 (+)	864	WP_027221711.1	prepilin peptidase	Machinery gene
AXF35_RS07765 (AXF35_09060)	-	1679204..1680409 (-)	1206	WP_027221712.1	cyclic nucleotide-binding domain-containing protein	-
AXF35_RS07770 (AXF35_09055)	-	1680521..1681114 (-)	594	WP_027221713.1	hypothetical protein	-
AXF35_RS07775 (AXF35_09050)	-	1681130..1681585 (-)	456	WP_027221714.1	hypothetical protein	-
AXF35_RS07780 (AXF35_09045)	-	1681733..1682548 (+)	816	WP_027221715.1	pyruvate, water dikinase regulatory protein	-
AXF35_RS07785 (AXF35_09040)	-	1682632..1684086 (-)	1455	WP_027221716.1	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32945.55 Da
• Isoelectric Point: 8.0754

>NTDB_id=144877 AXF35_RS07760 WP_027221711.1 1678327..1679190(+) (pilD) [Legionella pneumophila subsp. pascullei strain F-4185]
MINTLIINYTWFMYLVIGLFSLAVGSLLNVIIYRLPIILQQEWREQCCELFNLEQQKEKIKLNLFLPRSFCPHCKAMVKA
WQNIPLLSYILLRGRCYQCNGSISIRYPFIELLTTVLSLYASWHFGFTIQLLFVLLAIWILIPLTFIDLDHQLLPDSLTL
GLLWLGLIANTWSLFVSLDIAVLSCAGAYLALWLFINLFYLITGKVGMGHGDFKLFAAFGAWFGWMYLPLILLMSSITGA
IIGLIYLRRNDKSSDTAIPFGPFLCISGLITMFWGGSIINWYMGFWM

Nucleotide

• Length: 864 bp

>NTDB_id=144877 AXF35_RS07760 WP_027221711.1 1678327..1679190(+) (pilD) [Legionella pneumophila subsp. pascullei strain F-4185]
ATGATAAATACACTAATAATCAATTATACATGGTTTATGTATTTAGTCATCGGACTCTTTTCTTTAGCTGTTGGAAGTTT
ACTTAATGTTATAATCTATCGCTTACCGATTATTTTGCAGCAAGAATGGCGAGAACAATGCTGTGAGTTATTTAATCTTG
AGCAACAAAAAGAAAAAATAAAACTTAATCTATTTTTACCACGTTCATTTTGCCCTCATTGTAAAGCGATGGTTAAAGCG
TGGCAGAATATTCCCCTATTAAGCTATATCTTGTTAAGAGGACGCTGTTATCAATGCAACGGTTCCATTTCAATTCGCTA
TCCCTTTATTGAGTTATTGACCACAGTTTTATCATTATACGCCAGTTGGCATTTCGGTTTTACAATACAATTATTATTTG
TTTTATTAGCTATCTGGATATTGATACCACTTACTTTTATCGATCTTGATCATCAATTACTCCCTGATAGTCTAACTTTA
GGACTATTATGGCTTGGTCTTATTGCTAATACATGGAGTCTATTTGTTAGTCTTGATATTGCTGTGTTAAGTTGTGCCGG
CGCCTATTTAGCCTTATGGTTATTTATTAATCTATTTTATCTGATTACAGGTAAGGTAGGTATGGGGCATGGTGATTTCA
AATTATTTGCAGCATTTGGCGCATGGTTTGGCTGGATGTATTTACCATTAATTCTTCTGATGTCTTCAATAACCGGGGCT
ATCATTGGTTTGATTTATTTAAGGAGAAATGATAAATCAAGTGATACTGCAATTCCTTTCGGCCCTTTTCTTTGTATTTC
TGGGTTGATAACTATGTTTTGGGGAGGCTCCATTATCAATTGGTACATGGGTTTTTGGATGTGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.754	97.909	0.477
pilD	Acinetobacter nosocomialis M2	48.905	95.47	0.467
pilD	Acinetobacter baumannii D1279779	48.188	96.167	0.463
pilD	Vibrio campbellii strain DS40M4	46.403	96.864	0.449
pilD	Neisseria gonorrhoeae MS11	44.565	96.167	0.429