Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAV29_RS01915 Genome accession   NZ_CP011346
Coordinates   382425..383378 (+) Length   317 a.a.
NCBI ID   WP_046559346.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ-D34     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377425..388378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV29_RS01895 (AAV29_01895) - 377467..378900 (+) 1434 WP_161625271.1 sensor histidine kinase -
  AAV29_RS01900 (AAV29_01900) rapC 379053..380201 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  AAV29_RS01905 (AAV29_01905) phrC 380185..380304 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AAV29_RS20315 - 380456..380566 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  AAV29_RS01910 (AAV29_01910) - 380646..382010 (-) 1365 WP_046559345.1 aspartate kinase -
  AAV29_RS01915 (AAV29_01915) ceuB 382425..383378 (+) 954 WP_046559346.1 ABC transporter permease Machinery gene
  AAV29_RS01920 (AAV29_01920) - 383368..384315 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  AAV29_RS01925 (AAV29_01925) - 384309..385067 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  AAV29_RS01930 (AAV29_01930) - 385089..386033 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  AAV29_RS01935 (AAV29_01935) - 386075..387499 (-) 1425 WP_015388705.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=144831 AAV29_RS01915 WP_046559346.1 382425..383378(+) (ceuB) [Bacillus velezensis strain JJ-D34]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMIFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=144831 AAV29_RS01915 WP_046559346.1 382425..383378(+) (ceuB) [Bacillus velezensis strain JJ-D34]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGATTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment