Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAV29_RS01720 Genome accession   NZ_CP011346
Coordinates   321199..321636 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ-D34     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 316199..326636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV29_RS21420 - 316787..316915 (-) 129 Protein_296 hypothetical protein -
  AAV29_RS01690 (AAV29_01690) - 317057..318259 (+) 1203 WP_046559335.1 GTP-binding protein -
  AAV29_RS01695 (AAV29_01695) - 318324..319460 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  AAV29_RS01700 (AAV29_01700) - 319475..319909 (+) 435 WP_021494203.1 RDD family protein -
  AAV29_RS01705 (AAV29_01705) - 320026..320301 (+) 276 WP_369719109.1 YckD family protein -
  AAV29_RS21735 - 320405..320488 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  AAV29_RS01710 (AAV29_01710) - 320520..320738 (+) 219 Protein_302 family 1 glycosylhydrolase -
  AAV29_RS01715 (AAV29_01715) nin/comJ 320779..321177 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  AAV29_RS01720 (AAV29_01720) nucA/comI 321199..321636 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAV29_RS01725 (AAV29_01725) hxlB 321995..322552 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  AAV29_RS01730 (AAV29_01730) hxlA 322549..323184 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  AAV29_RS01735 (AAV29_01735) - 323416..323778 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=144828 AAV29_RS01720 WP_003156588.1 321199..321636(-) (nucA/comI) [Bacillus velezensis strain JJ-D34]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=144828 AAV29_RS01720 WP_003156588.1 321199..321636(-) (nucA/comI) [Bacillus velezensis strain JJ-D34]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCAATAAAAGAAGGGCATTCCAGCATTTGCACCATTGATAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment