Detailed information NTG0144710

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AXA63_RS21345
• Genome accession: NZ_CP014215
• Coordinates: 28375..29235 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152285.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain YU-R612
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 23375..34235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AXA63_RS00125 (AXA63_00125)	-	24266..25576 (+)	1311	WP_000753294.1	tetratricopeptide repeat protein	-
AXA63_RS00130 (AXA63_00130)	-	25653..25979 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AXA63_RS00135 (AXA63_00135)	rlmB	26081..26830 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AXA63_RS00140 (AXA63_00140)	-	26866..27780 (+)	915	WP_000075011.1	DMT family transporter	-
AXA63_RS00145 (AXA63_00145)	coaE	27777..28373 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
AXA63_RS21345 (AXA63_00150)	pilD	28375..29235 (-)	861	WP_001152285.1	A24 family peptidase	Machinery gene
AXA63_RS00155 (AXA63_00155)	pilC	29235..30461 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
AXA63_RS00160 (AXA63_00160)	pilB	30491..32203 (-)	1713	WP_001274990.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AXA63_RS00165 (AXA63_00165)	tpiA	32495..33289 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
AXA63_RS00170 (AXA63_00170)	secG	33302..33631 (+)	330	WP_000555572.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32153.54 Da
• Isoelectric Point: 7.1042

>NTDB_id=144710 AXA63_RS21345 WP_001152285.1 28375..29235(-) (pilD) [Acinetobacter baumannii strain YU-R612]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
IGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=144710 AXA63_RS21345 WP_001152285.1 28375..29235(-) (pilD) [Acinetobacter baumannii strain YU-R612]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
ATTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448