Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AXA63_RS16105 Genome accession   NZ_CP014215
Coordinates   3324203..3324838 (+) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A059ZH17
Organism   Acinetobacter baumannii strain YU-R612     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3319203..3329838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA63_RS16090 (AXA63_16090) adeT2 3320263..3321249 (-) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -
  AXA63_RS16095 (AXA63_16095) - 3321329..3322144 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  AXA63_RS16100 (AXA63_16100) recG 3322165..3324210 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG Machinery gene
  AXA63_RS16105 (AXA63_16105) comF 3324203..3324838 (+) 636 WP_000472273.1 ComF family protein Machinery gene
  AXA63_RS16110 (AXA63_16110) - 3324841..3325242 (-) 402 WP_000849701.1 NUDIX domain-containing protein -
  AXA63_RS16115 (AXA63_16115) - 3325257..3325604 (-) 348 Protein_3176 TIGR00730 family Rossman fold protein -
  AXA63_RS16130 (AXA63_16130) - 3326779..3327027 (-) 249 Protein_3178 LOG family protein -
  AXA63_RS16135 (AXA63_16135) - 3327185..3328198 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  AXA63_RS16140 (AXA63_16140) - 3328268..3328555 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  AXA63_RS16145 (AXA63_16145) - 3328567..3329208 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=144685 AXA63_RS16105 WP_000472273.1 3324203..3324838(+) (comF) [Acinetobacter baumannii strain YU-R612]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=144685 AXA63_RS16105 WP_000472273.1 3324203..3324838(+) (comF) [Acinetobacter baumannii strain YU-R612]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTTGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZH17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991