Detailed information NTG0144468

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AWB63_RS09325
• Genome accession: NZ_CP014144
• Coordinates: 2032433..2033533 (-)
• Length: 366 a.a.
• NCBI ID: WP_038676931.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain JF
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2027433..2038533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AWB63_RS09310 (AWB63_09310)	-	2028268..2029140 (-)	873	WP_002883963.1	YitT family protein	-
AWB63_RS09315 (AWB63_09315)	trpS	2029569..2030591 (+)	1023	WP_002883969.1	tryptophan--tRNA ligase	-
AWB63_RS09320 (AWB63_09320)	guaB	2030770..2032251 (+)	1482	WP_013991341.1	IMP dehydrogenase	-
AWB63_RS09325 (AWB63_09325)	recF	2032433..2033533 (-)	1101	WP_038676931.1	DNA replication/repair protein RecF	Machinery gene
AWB63_RS09330 (AWB63_09330)	yaaA	2033536..2033913 (-)	378	WP_038676929.1	S4 domain-containing protein YaaA	-
AWB63_RS09335 (AWB63_09335)	yfmF	2033991..2035241 (+)	1251	WP_038676927.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
AWB63_RS09340 (AWB63_09340)	yfmH	2035243..2036520 (+)	1278	WP_022496146.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
AWB63_RS09345 (AWB63_09345)	-	2036579..2037436 (+)	858	WP_022496147.1	helix-turn-helix domain-containing protein	-
AWB63_RS09350 (AWB63_09350)	pgsA	2037449..2037991 (+)	543	WP_002885640.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42202.25 Da
• Isoelectric Point: 8.4088

>NTDB_id=144468 AWB63_RS09325 WP_038676931.1 2032433..2033533(-) (recF) [Streptococcus salivarius strain JF]
MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGARVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPDLKTFLVKNGNIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=144468 AWB63_RS09325 WP_038676931.1 2032433..2033533(-) (recF) [Streptococcus salivarius strain JF]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAGCCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAATGCCCAAGGAAAAACAAATATTCTTGAGGCCATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAAGAACTGATTCAATTTCAACAAAATACTCTCAAACTGAACGGCATCGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTTAACCACCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACTGTGGTGCTATTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGCCTGAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACTTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCCTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTGTTAGATGAACAGCTTTCCGATTTTGGAGC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGGAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGCGCCTTAAAATCTCCTACGAATCTAATATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCACATAGGGATGATTTGACATTTTA
CATCAATGACATGAACGCATCTTTCGGTAGTCAGGGGCAGCAACGTAGCCTCATTCTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAACCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ACCTGATTTAAAGACCTTCTTAGTTAAGAATGGTAATATTTATGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-343)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.084	97.814	0.637
recF	Bacillus subtilis subsp. subtilis str. 168	44.173	100	0.445