Detailed information NTG0144461

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: YQ44_RS22380
• Genome accession: NZ_CP011319
• Coordinates: 5197150..5198019 (+)
• Length: 289 a.a.
• NCBI ID: WP_071325266.1
• Uniprot ID: A0A1I9Y237
• Organism: Janthinobacterium sp. 1_2014MBL_MicDiv
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5192150..5203019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YQ44_RS22365 (YQ44_22395)	-	5192727..5194202 (+)	1476	WP_071325263.1	cobyric acid synthase	-
YQ44_RS22370 (YQ44_22400)	-	5194302..5195774 (+)	1473	WP_232250971.1	DHA2 family efflux MFS transporter permease subunit	-
YQ44_RS22375 (YQ44_22405)	-	5195848..5197044 (+)	1197	WP_071325265.1	type II secretion system F family protein	-
YQ44_RS22380 (YQ44_22410)	pilD	5197150..5198019 (+)	870	WP_071325266.1	A24 family peptidase	Machinery gene
YQ44_RS22385 (YQ44_22415)	coaE	5198062..5198709 (+)	648	WP_071325267.1	dephospho-CoA kinase	-
YQ44_RS22390 (YQ44_22420)	zapD	5198772..5199527 (+)	756	WP_071325268.1	cell division protein ZapD	-
YQ44_RS22395 (YQ44_22425)	yacG	5199539..5199727 (+)	189	WP_071325269.1	DNA gyrase inhibitor YacG	-
YQ44_RS22400 (YQ44_22430)	-	5199851..5200273 (-)	423	WP_071325270.1	PIN domain-containing protein	-
YQ44_RS22405 (YQ44_22435)	-	5200273..5200482 (-)	210	WP_071325271.1	hypothetical protein	-
YQ44_RS22410 (YQ44_22440)	-	5200603..5201040 (-)	438	WP_071325272.1	NUDIX domain-containing protein	-
YQ44_RS22415 (YQ44_22445)	-	5201037..5201903 (-)	867	WP_071325273.1	ATP-binding protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30958.66 Da
• Isoelectric Point: 6.9463

>NTDB_id=144461 YQ44_RS22380 WP_071325266.1 5197150..5198019(+) (pilD) [Janthinobacterium sp. 1_2014MBL_MicDiv]
MLQDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRIPKMMQRDSDNYVAEESGQPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVISYLLLRGKCSACQAPISARYPLVELLTGALSAVLVWHFGSGWTGLATLVFAYLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLQDAVIGAAAGYLALWSVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSLV
GALVGIGLIVFARRGRDKPIPFGPYLAAAGLIALLYGTPLSQLTLGLIG

Nucleotide

• Length: 870 bp

>NTDB_id=144461 YQ44_RS22380 WP_071325266.1 5197150..5198019(+) (pilD) [Janthinobacterium sp. 1_2014MBL_MicDiv]
ATGCTGCAAGATACCCTGTTGTTCGCCGCGCCCGGCAACCTGCCCGTCGCCCTCGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGCTTCCTGAACGTCGTGATCCACCGCATCCCGAAAATGATGCAGCGCGACTCCGATAATTACGTGGCGGAAGAAA
GCGGCCAGCCGTTGCCGCATACGGACCGCTACAACCTGATGCTGCCGCATTCGAACTGCACCGCCTGCGGCCACCGCATC
ACGGCCATGGAAAACATTCCCGTCATCAGCTACCTGCTGCTACGCGGAAAATGCAGCGCCTGCCAGGCACCGATCTCGGC
CCGCTATCCGCTGGTGGAATTGCTCACGGGCGCGCTGTCGGCCGTGCTGGTCTGGCATTTCGGCAGCGGCTGGACGGGGC
TGGCCACGCTCGTCTTTGCCTACCTGCTGATCGCCATGACCTTCATCGACGCCGATACGCAAATGCTGCCGGACGACCTC
ACCTTCCCCCTGCTGTGGGCCGGTCTGCTGGTCAATATCAACGGTACTTTCGTGCCCCTGCAGGATGCCGTCATCGGCGC
GGCCGCCGGCTATCTGGCCCTGTGGAGCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAAGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTCGGTGCCTGGCTGGGCTGGACCATGTTGCCGACAATCATCTTATTGTCGTCGCTGGTC
GGCGCCCTGGTCGGCATCGGCCTGATCGTGTTTGCCCGGCGGGGACGCGACAAGCCGATTCCGTTTGGCCCCTACCTGGC
CGCCGCGGGACTCATCGCCCTGCTGTACGGCACGCCGCTGTCGCAACTCACGCTTGGCCTGATCGGCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

• Type IV leader peptidase family (Peptidase_A24) (137-246)

3D structure

• AlphaFold DB: A0A1I9Y237

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56	95.156	0.533
pilD	Vibrio campbellii strain DS40M4	56.322	90.311	0.509
pilD	Acinetobacter baumannii D1279779	48.432	99.308	0.481
pilD	Acinetobacter nosocomialis M2	47.387	99.308	0.471
pilD	Neisseria gonorrhoeae MS11	51.562	88.581	0.457