Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   YQ44_RS02420 Genome accession   NZ_CP011319
Coordinates   559293..560357 (+) Length   354 a.a.
NCBI ID   WP_071322014.1    Uniprot ID   -
Organism   Janthinobacterium sp. 1_2014MBL_MicDiv     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 554293..565357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ44_RS02400 (YQ44_02410) - 554716..556710 (+) 1995 WP_071322010.1 MacB family efflux pump subunit -
  YQ44_RS02405 (YQ44_02415) - 556903..557847 (+) 945 WP_232251295.1 ABC transporter substrate-binding protein -
  YQ44_RS02410 (YQ44_02420) ccsA 558104..558907 (+) 804 WP_071322012.1 cytochrome c biogenesis protein CcsA -
  YQ44_RS02415 (YQ44_02425) - 558904..559164 (+) 261 WP_071322013.1 PP0621 family protein -
  YQ44_RS02420 (YQ44_02430) pilR 559293..560357 (+) 1065 WP_071322014.1 sigma-54 dependent transcriptional regulator Regulator
  YQ44_RS02425 (YQ44_02435) ampD 560371..560982 (+) 612 WP_071322015.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  YQ44_RS02430 (YQ44_02440) - 561377..564328 (+) 2952 WP_071322016.1 ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37692.09 Da        Isoelectric Point: 9.9042

>NTDB_id=144454 YQ44_RS02420 WP_071322014.1 559293..560357(+) (pilR) [Janthinobacterium sp. 1_2014MBL_MicDiv]
MSRLSPRTVAAIGMPPAPQLSGNSAAMQALRAQIGRIACCGAPVAIRGESGSGKELAARAIHAQGARAPFPFIAVNCGAI
PEALMEAEFFGCRQGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRALQERRVRKLGGSTDEAVDVRILCAS
QHGLARGVAAGTFRRDLYYRLNVIELAVPPLRERLGDLQVLCEAILARLAPRQTVRLAPPVLAALGNYAFPGNVRELENL
LERALAFADGGVIALDGLGLPPAVPVPAAVPMRAAAGAVPLEAAVPGLERQLSLPGMAARGEVAVLPLAAYLCRAERDMI
VLALERERYHRGRAARQLGLSVRQLRYRMQKLTI

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=144454 YQ44_RS02420 WP_071322014.1 559293..560357(+) (pilR) [Janthinobacterium sp. 1_2014MBL_MicDiv]
ATGTCCCGCCTCAGCCCGCGTACCGTGGCCGCCATCGGCATGCCGCCGGCACCGCAATTGAGTGGCAACTCGGCCGCCAT
GCAGGCGCTGCGCGCGCAGATCGGCCGCATCGCCTGCTGCGGCGCGCCGGTGGCCATCCGCGGCGAGTCGGGCAGCGGCA
AGGAGTTGGCGGCGCGCGCCATCCATGCGCAGGGCGCGCGCGCCCCTTTTCCGTTTATCGCCGTCAATTGCGGGGCGATA
CCCGAAGCGCTGATGGAGGCGGAATTCTTTGGCTGCCGCCAGGGCGCCTATACGGGCGCGCTGCATGAACGGCAGGGCCT
GTTCCAGGCCGCGCACGGCGGCAGCCTGCTGCTCGATGAAGTCGACGACCTGCCGCTGGCCATGCAGGTAAAGCTGTTGC
GCGCCCTGCAGGAGCGCCGCGTGCGCAAGCTGGGCGGCAGCACCGACGAAGCCGTCGATGTGCGCATCCTGTGCGCCAGC
CAGCATGGCCTGGCGCGCGGCGTGGCGGCCGGCACCTTTCGCCGCGATCTGTATTACCGGCTCAATGTGATCGAGCTGGC
CGTGCCGCCGTTGCGGGAACGGCTCGGCGATCTGCAGGTATTATGTGAGGCGATACTGGCGCGCCTGGCGCCAAGGCAGA
CCGTGCGGCTGGCGCCGCCGGTGCTGGCGGCACTGGGCAATTATGCGTTTCCAGGCAATGTGCGCGAGCTGGAAAACCTG
CTGGAACGGGCGCTGGCTTTTGCCGACGGCGGCGTGATCGCGCTCGACGGCCTGGGCTTGCCGCCAGCCGTTCCGGTCCC
GGCTGCGGTCCCGATGCGCGCTGCAGCTGGCGCCGTGCCCTTGGAAGCGGCGGTGCCCGGACTGGAGCGGCAACTGTCGC
TGCCCGGCATGGCGGCGCGCGGCGAGGTGGCCGTCCTGCCATTGGCGGCGTATCTGTGCCGGGCCGAGCGCGACATGATC
GTGCTGGCGCTGGAGCGGGAACGCTATCACCGCGGGCGGGCGGCGCGGCAACTGGGGCTCAGCGTGCGCCAGTTGCGTTA
CAGAATGCAAAAATTGACGATATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(21-186)

Bacterial regulatory protein, Fis family (HTH_8)

(315-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.603

96.893

0.5
  pilR Acinetobacter baumannii strain A118

40.118

95.763

0.384

Multiple sequence alignment